Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latrodectus_20hesperus_20[genbank_20GCA_5F000697925.1_202014-06-04] 151,814 sequences; 1,137,104,656 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq2770 116 3e-21 >seq2770 Length=41231 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || ||||| | ||| | ||| | ||| || ||| || |||||||||||||| || | Sbjct 20969 CCACCTCTAAGTCTGAGCACAAGATGCAGAGTGGATTCCTTTTGAATATTATAGTCTGAT 20910 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| | |||| || | |||||||||||||| || | || ||||| || |||| Sbjct 20909 AATGTTCTGCCATCTTCAAGCTGTTTTCCTGCAAAAATAAGTCGCTGCTGATCAGGAGGA 20850 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||||||||| |||||| || || | ||| |||||| ||||| || Sbjct 20849 ATGCCTTCTTTATCTTGAATTTTAGCCTTTACATTTTCAATAGTATCACTGGGCTCAACC 20790 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || ||||||||||| || || ||||| || ||||||||||| Sbjct 20789 TCTAGAGTTATTGTTTTACCAGTCAAGGTCTTTACGAATATTTGCAT 20743 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||| || || || ||||| || || || ||||||||||| ||||| || | Sbjct 19829 CCTCCTCTTAACCTCAAAACCAAGTGCAGTGTAGATTCTTTTTGAATGTTATAGTC-TGA 19771 Query 43955 AATTG-ACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | |||| |||| || | ||||| || ||||| || | |||||||| || |||| Sbjct 19770 AAGCGTACGCCCATCTTCTAGCTGTTTACCAGCAAAAATGAGACGTTGCTGATCAGGAGG 19711 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 || |||||||||||| ||||||| ||| || | ||| || || | ||| || Sbjct 19710 TATGCCTTCTTTATCTTGAATTTTTGCTTTTACATTTTCAATTGTGTCACTGGACTCAAC 19651 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || ||||||||||| || | ||||| ||||| || ||||| Sbjct 19650 CTCTAATGTTATTGTTTTACCAGTAAGTGTCTTTACAAAGATCTGCAT 19603 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC-GT 43952 ||| ||||| || || | || | ||| || || ||||||||||||||||| || | Sbjct 19602 ACCACCTCTTAACCTAAGTACAAGATGAAGGGTAGATTCTTTTTGAATATTATAGTCTGA 19543 Query 43953 TTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 | | || || |||| || | |||||| |||||||| || |||| ||||| || ||| Sbjct 19542 TAGAGTG-CGACCATCTTCAAGTTGTTTACCTGCAAAGATTAACCTCTGCTGATCGGGAG 19484 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||| |||||| ||||||| ||| || | | | || || || || | Sbjct 19483 GAATTCCTTCCTTATCTTGAATTTTTGCTTTAACATTTTCTATCGTGTCACTGGGTTCTA 19424 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | |||||| |||||||| ||||| || || || || |||||||| Sbjct 19423 CTTCTAACGTAATGGTTTTACCAGTTAATGTTTTAACGAAGATTTGCAT 19375 Score = 98.7 bits (108), Expect = 7e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 43907 CTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC-GTTTAATTGACGCTC 43965 || || || ||||||| || |||||||| || ||||| || | | || | || | Sbjct 20729 CTCAAAACTAAATGTAAAGTTGATTCTTTTTGGATGTTATAGTCTGATAAAGTCCTGC-C 20671 Query 43966 ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTT 44025 ||| || ||||| || || ||||| || | |||||||| || |||| | |||||||| Sbjct 20670 ATCTTCTAATTGCTTACCAGCAAAGATAAGACGTTGCTGATCTGGAGGAATCCCTTCTTT 20611 Query 44026 ATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAAT 44085 |||| |||||| ||| || | | | ||||| || || || || | || || Sbjct 20610 ATCTTGAATTTTGGCTTTAACATTTTCTATCGTATCACTTGGTTCTACTTCAAGAGTTAT 20551 Query 44086 TGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||||||| |||||||| || || ||||||||||| Sbjct 20550 TGTTTTACCAGTTAAAGTTTTAACGAATATTTGCAT 20515 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||||| || || || | ||| | || ||||| ||||| || || || Sbjct 20058 ACCTCCTCTCAGTCGCAAGACGAGATGCAAAGTAGATTCTTTCTGAATGTTGTAGTCAGA 19999 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 |||| ||| |||| || | || || || ||||| || |||| || || || | || Sbjct 19998 TAATGTACGACCATCTTCAAGCTGCTTACCAGCAAAAATTAACCTCTGTTGATCTGGTGG 19939 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||| ||| |||||| ||| || | ||| ||||| ||||| || Sbjct 19938 AATTCCTTCTTTGTCTTGAATTTTAGCTTTAACATTTTCAATTGTATCACTAGGCTCTAC 19879 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| ||||| || ||||| ||||||||||| || ||||| Sbjct 19878 TTCTAAGGTAATAGTTTTCCCAGTTAATGTCTTCACAAAAATCTGCAT 19831 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| |||||||||||||| || | || || || ||||||||||| |||||||| Sbjct 20514 ACCACCTCTCAATCTTAATACAAGGTGAAGTGTAGATTCTTTTTGAATGTTATAATCTGA 20455 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | || |||| || | || || || ||||| || | | || || || |||| Sbjct 20454 TAGTGTGCGACCATCTTCTAGCTGCTTACCAGCAAAAATGAGTCTCTGTTGATCAGGAGG 20395 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||||| ||| || |||||| | ||| || || || ||||| Sbjct 20394 AATACCTTCTTTATCTTGAATCTTAGCTTTGACATTTTCAATTGTGTCACTTGGTTCCAC 20335 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || ||||| || | ||| || ||||| || ||||| Sbjct 20334 CTCAAGTGTAATGGTCTTACCAGTAAGAGTTTTGACAAAAATCTGCAT 20287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354121178732472