Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latrodectus_20hesperus_20[genbank_20GCA_5F000697925.1_202014-06-04] 151,814 sequences; 1,137,104,656 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq8063 118 9e-22 >seq8063 Length=21912 Score = 118 bits (130), Expect = 9e-22 Identities = 162/224 (72%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 ||||||| |||||||||| || || ||||| ||||| |||||||| |||| ||| | Sbjct 10432 CTTCATCCCTACTTATTAATTCATTGCTGAATGTAAGACCAGGCATAAGACCTCTTTTCT 10491 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | |||||| |||| ||||| ||||| || |||||||| ||||||||||| ||||| | Sbjct 10492 TCAACCAAAAGATAGATGCAAAAGAACCAGAGAAAAATATCCCTTCAACTGCAGCAAATG 10551 Query 13293 CTATCAACCTTTCACCATACGTACTATTTTTACTCTCT-ATCCACTTTCTGGCCCAGTTT 13351 | | | | || ||| | | | |||| | | || ||||| ||| |||||||| | Sbjct 10552 CAACTACTCGCTCTCCAAAAGAAGCATTTGT-GTGACTGATCCAATTTAAGGCCCAGTCT 10610 Query 13352 GCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAA 13395 ||||| ||||| || | | |||| || || || ||||| Sbjct 10611 GCTTTCCTCTTAACACAAGGTAGAGTTTCAATAGCATTGAATAA 10654 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 12956 TTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATT 13015 |||| ||| || |||||||| || |||||||| |||||||| ||||| || ||||||||| Sbjct 8973 TTTTCACATCCCAATTCTAGCAATAATCTGTCTGCAACAAATTCTATATATTGTTTCATT 9032 Query 13016 AAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCT 13075 || ||| ||||||||| ||||| || || | ||||||||| || || | || ||| Sbjct 9033 AATTCATTGTTCATTCCAATTAAAGCCACTGGTAAAGCTTCTGTCAAGAATTGTTGTTCA 9092 Query 13076 ATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGA 13135 ||| | ||||| || ||| ||| | | | | || ||| || ||| || Sbjct 9093 ATAGCCACTGCATCAGTAATTATTTGTACAACTCTTTTTTCTGTGGGTTTATTAACTAAG 9152 Query 13136 TGCTTAAACATCATACATGCAAAATCACAGTG 13167 || ||||||| | |||||||||||||| || Sbjct 9153 TGGCTAAACATGAGGCATGCAAAATCACAATG 9184 Score = 109 bits (120), Expect = 5e-19 Identities = 149/205 (73%), Gaps = 10/205 (5%) Strand=Plus/Plus Query 13538 AAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGC--AAGTATGTGCTTAATAA 13595 || ||||| || || || || ||||| || |||||||| || || |||| | | |||| Sbjct 13765 AAATTTTCATTGACAATTCCATCACTTGCTGCAAAAAATGCTAAAATATGAGAT--ATAA 13822 Query 13596 AttttttttCGTTTTCTGAC---AACTTTAACCAATCTGGAAAATCTTTTGATAAATCTA 13652 | | |||||| ||| || || ||| ||| || |||||||| |||||||| | Sbjct 13823 AATGTTTTTC---TTCAGATTTTAATTTTTCCCAGTCATTCAAATCTTTAGATAAATCAA 13879 Query 13653 CCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTAT 13712 | || ||||| |||||||||||||| | || || ||||||||| ||| ||||| | | Sbjct 13880 CTTCTTCAACAGTCCAAAAAGAAGCTTCTGCTTTTTTATACATCTGCCAGATATCTTGGT 13939 Query 13713 AAACAATGGGAAACACAACGTATCT 13737 | |||| ||||| ||||| |||| Sbjct 13940 ACTCAATTGGAAATACAACAAATCT 13964 Score = 96.9 bits (106), Expect = 3e-15 Identities = 96/122 (79%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 13413 TGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCG 13472 ||||| || || ||||| || | | |||||||||||| ||||| | |||||| || | Sbjct 13316 TGTCTTTGATGTATGTATCAATTAGAAGGCTATACATTTCAGAATGTACATTTTCAATTG 13375 Query 13473 CTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTT 13531 |||||||||| |||||||| ||||| || |||| ||| || ||||| || | ||||||| Sbjct 13376 CTATTTGGAATCCATAAAAGCATCTTGCTTCTGTTACTTGCACTTCTTGACT-AAATCTT 13434 Query 13532 TC 13533 || Sbjct 13435 TC 13436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430184982087228