Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latrodectus_20hesperus_20[genbank_20GCA_5F000697925.1_202014-06-04] 151,814 sequences; 1,137,104,656 total letters Query= NC_012418.1 Length=43152 Score E Sequences producing significant alignments: (Bits) Value seq3139 113 1e-20 >seq3139 Length=44538 Score = 113 bits (124), Expect = 1e-20 Identities = 307/470 (65%), Gaps = 15/470 (3%) Strand=Plus/Plus Query 39573 TGCATCGGGATCACCGCCGCCCTCCAGGGCTACCGGGCTGACATCCTGATCCCTGACGAC 39632 ||| | || |||||||| || | ||||| | || ||||| | ||||| || || || Sbjct 8779 TGCGTAGGTATCACCGCATCCTTGCAGGGTAAGCGTGCTGATCTGCTGATTCCAGATGAT 8838 Query 39633 ATCGAGACCACGAAGAACGGCCTGACCGCAACCGAGCGGGCCAAGCTGACGCGGCAGTCG 39692 |||||||| ||||| ||||| ||||| || || | || | |||| | || || Sbjct 8839 ATCGAGACTACGAACAACGGTCTGACGGCTACAAACCGTGAAGTGCTGCTGTTGCGCTCC 8898 Query 39693 CAGGAGTTCACCTCCATCTGTACCCACGGTAAGATTCTGTACCTGGGCACTCCGCAGTCG 39752 |||| ||| || | || ||| ||||| |||| |||||||||||| || |||||| | Sbjct 8899 AAGGACTTCTCCGCGATTAATACGCACGGGAAGACTCTGTACCTGGGGACACCGCAGACC 8958 Query 39753 CGGGAATCCATCTACAACGGCCTGCCTGCGCGGGGCTTCCTCATGCGCATCTGGCCGGGC 39812 || |||||||| |||| | ||||| ||||| || ||| | ||||| || Sbjct 8959 AAAGACAGTATCTACAAGACCCTGGCGGCGCGTGGCTTTGAGATTCGCGTATGGCCTGGT 9018 Query 39813 CGGTTCCCGACCCTGGACGAGCAGAAGCGCTACGGCGAGTGGCTGGCCCCCTCTATCGTG 39872 || | || ||| | || || || | || |||| || |||| || || | Sbjct 9019 CGCGTACCTACCGTAGAAGAAGAGGAACGTTACGCCGGAACATTGGCTCCGATGATTCAG 9078 Query 39873 GACCGTATCGCCCGCCTGGAAGAGAAGGGCCACAACCCCCGCACAGGCAAGGGCCTGGAC 39932 || || || ||| || | | || ||||| ||||||||| Sbjct 9079 GA---GATGATTCG---------GAACGG---CGCGGCGCGTACAGGTTTCGGCCTGGAC 9123 Query 39933 GGCACCCGTGGCTGGGCCGCTGACCCGCAGCGCTACAACGAAGAGGACCTGATCGACAAG 39992 |||| ||| ||| || | ||||| ||| |||| ||||| || | |||| |||| Sbjct 9124 GGCAACCGCGGCGAGGTAACCGACCCCATGCGTTACACGGAAGATGATTTAATCGGCAAG 9183 Query 39993 GAACTGGACCAGGGTGCCGAGGGCTTCCAGCTCCAGTACATGCTGGACAC 40042 ||||| ||| || | ||||| |||||| | |||||||||||||| || Sbjct 9184 GAACTTGACTTCGGCCCTGAGGGGTTCCAGTTGCAGTACATGCTGGATAC 9233 Score = 91.5 bits (100), Expect = 4e-14 Identities = 196/288 (68%), Gaps = 4/288 (1%) Strand=Plus/Plus Query 16414 GCTGTGGGCCGAGCAGGGCAAGCTATGCCCGCTCTGCGGTAAGCCCATCGATATCAGCGT 16473 ||||| ||| | ||||| || ||||| | ||||| |||||||| || ||| |||| | Sbjct 30738 GCTGTATGCCCAACAGGGTAATGTATGCGCCCTCTGTGGTAAGCCTATTGATTTCAGTAT 30797 Query 16474 GAAGGGCGAGGCGGTGATGGACCACGACCACGAGACGGGGCTGGTGCGGGGCGTCCTGCA 16533 ||||||||||| || ||||||||||| || || ||| | || || | ||||| Sbjct 30798 CAAGGGCGAGGCAGTCGCCGACCACGACCATATTACAGGTCTGATACGTGGTGCACTGCA 30857 Query 16534 TCGATCCTGTAACACCGCAGAAGGCAAGATCACGAACGCGGCGGGTTCCTGGGGATGC-A 16592 || ||||| || | ||||| || ||| | | ||||| || || |||||| ||| | Sbjct 30858 CCGCTCCTGCAATGCAGCAGAGGGTAAGGTGGCTAACGCCGCCGGCCGCTGGGG-TGCGA 30916 Query 16593 AGTCGATGAAATACACCGACATCATCCCCTACCTTCGTGCCCTCCTGACGTACCTGGAGG 16652 || ||| | ||| || |||| | || | || ||| ||| |||||||| Sbjct 30917 AGAGTATGCAGTACGACGCCATCCTGCCTTGGCTGGAGAACCTGCTGGCGTACCTGCGCA 30976 Query 16653 GGCCGAAGCATCC-GCTGATCTACCCCCTGCACAAGACCGACGAGGAG 16699 |||| |||| || | || ||||| ||||||||| ||| ||| Sbjct 30977 AGCCG-AGCACCCAGTACATTTACCCAACCCACAAGACCACCGATGAG 31023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137716078265752