Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latrodectus_20hesperus_20[genbank_20GCA_5F000697925.1_202014-06-04] 151,814 sequences; 1,137,104,656 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq8063 221 1e-52 seq16555 105 8e-18 seq139299 102 9e-17 seq9609 96.9 4e-15 >seq8063 Length=21912 Score = 221 bits (244), Expect = 1e-52 Identities = 187/230 (81%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 |||||||||||||| || ||||||||||| ||||||||||||||||| | ||| ||| Sbjct 13762 ACCAAATTTTCATTGACAATTCCATCACTTGCTGCAAAAAATGCTAAAATATGAGATATA 13821 Query 19405 AAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACT 19464 ||||||||||| || || ||||| | | ||| ||||| | ||||||||||||||| ||| Sbjct 13822 AAATGTTTTTCTTCAGATTTTAATTTTTCCCAGTCATTCAAATCTTTAGATAAATCAACT 13881 Query 19465 TCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATAT 19524 |||||||| |||||||||||||| ||||||||||||||||| | ||| ||||| | || Sbjct 13882 TCTTCAACAGTCCAAAAAGAAGCTTCTGCTTTTTTATACATCTGCCAGATATCTTGGTAC 13941 Query 19525 TGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATAGGTTC 19574 | || ||||||| |||||||||| | ||| || || | || ||||| Sbjct 13942 TCAATTGGAAATACAACAAATCTACGTGGATTCTCCTTTAAAAGTGGTTC 13991 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 19225 TCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCC 19284 ||||| | |||| ||| || | | || |||||||| ||||| | |||||| || || Sbjct 13318 TCTTTGATGTATGTATCAATTAGAAGGCTATACATTTCAGAATGTACATTTTCAATTGCT 13377 Query 19285 ATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCG 19344 || || ||||| ||||| |||||||||||||||| || ||||| || ||||||||| Sbjct 13378 ATTTGGAATCCATAAAAGCATCTTGCTTCTGTTACTTGCACTTCTTGACTAAATCTTTCC 13437 Query 19345 ACC 19347 ||| Sbjct 13438 ACC 13440 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18773 ATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCAC 18832 |||| ||||||| | || ||| || || ||||||| |||||| ||||| | ||| Sbjct 8980 ATCCCAATTCTAGCAATAATCTGTCTGCAACAAATTCTATATATTGTTTCATTAATTCAT 9039 Query 18833 AATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTA 18892 |||||||| ||||| || |||| || ||||| | |||| |||||| ||| | Sbjct 9040 TGTTCATTCCAATTAAAGCCACTGGTAAAGCTTCTGTCAAGAATTGTTGTTCAATAGCCA 9099 Query 18893 CTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAA 18952 |||| || | || || ||||||||| | ||| | || | | | || ||| Sbjct 9100 CTGCATCAGTAATTATTTGTACAACTCTTTTTTCTGTGGGTTTATTAACTAAGTGGCTAA 9159 Query 18953 ACATCAAACATGCAAAATCACAATGTAGTCCCT 18985 |||| | ||||||||||||||||| || |||| Sbjct 9160 ACATGAGGCATGCAAAATCACAATGAAGACCCT 9192 >seq16555 Length=11409 Score = 105 bits (116), Expect = 8e-18 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 48156 CCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATA 48215 ||||| ||||||| ||||||||| | ||| ||||| |||| |||| |||| Sbjct 11223 CCAGGGCATTCATCAGGACACATAAGACTCCACATTTCATCTTTTTCAACTCGTTTCATG 11164 Query 48216 AATATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCC 48274 || | |||||| ||||| | || ||| || ||||| || | | | | ||||| || || Sbjct 11163 AAAAGATCTGGAATCCACAAGGC-ATAGAACAAATCTCTTGCCCGTTGCTCTTCTTTTCC 11105 Query 48275 ACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATAT 48334 |||| | || | ||||||||| || | ||||||||||||||| || |||||||| || Sbjct 11104 TGTATTTTTCTTTAATTCAAGAAATTCAAATATATCAGCATGCCAAGGCTCTAAATAAAT 11045 Query 48335 TGCCATTACACCTGGTC 48351 ||| | | | || |||| Sbjct 11044 TGCAAATGCTCCAGGTC 11028 Score = 98.7 bits (108), Expect = 1e-15 Identities = 78/94 (83%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 49090 TTACTGGATCTATATGATCCATATCCAGTCCATAACATAAtttttttATTCTAGATGTAA 49149 |||||||||| ||| |||||||| || ||||||||| | ||||| ||| || || |||| Sbjct 1418 TTACTGGATCAATAAAATCCATATTCAATCCATAACACAGTTTTTGTATCCTGGAGGTAA 1359 Query 49150 TTTTATCAAACATTATATTCTCTTTACGACCGTC 49183 ||||||||||||| | ||| || |||||||| || Sbjct 1358 TTTTATCAAACATAACATTTTCCTTACGACCATC 1325 Score = 96.9 bits (106), Expect = 4e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413 ||||| || |||||||| | |||||| || |||||||| ||||||||||||||||| ||| Sbjct 6871 TTATTCCCACCTTGATCAACATATCTAGCTGTATTGTTGTAAACTCTTAACATTGGTACA 6812 Query 48414 ATACCATTTGATATACCATTGGT 48436 | ||||||||| | |||||||| Sbjct 6811 AGACCATTTGAAGTTCCATTGGT 6789 >seq139299 Length=970 Score = 102 bits (112), Expect = 9e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||| || ||||||||||||||||| |||||| | |||||||| ||||| | || | Sbjct 88 AGTTCCGGAGTTAAATAATGTTGGAGAAGCATGAGTGAACCATTTTTCTGACATTAAATG 147 Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAA 48718 || |||||||| ||| ||| ||||| ||| || || | |||||| | ||| || Sbjct 148 GTAAGTTTCAATGGCAGCATCAATATCATCAGAATGAATTCCGACAGATACTCTCATCAA 207 Query 48719 CATATATTGAGGTCTTTCAAC 48739 ||| | ||||| |||||||| Sbjct 208 CATGTGCTGAGGCCTTTCAAC 228 >seq9609 Length=20973 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 |||||||||||||||| ||||| | | || || || || |||||||| || || ||| Sbjct 20543 TGAAATTCTCCAGATAAAACTCTTCTTGTGTAAATGTTGCTAGTATATGGCTCAATGGAT 20602 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || || || |||||||| || || || ||||| | |||| ||| | |||| Sbjct 20603 TCATTATTACCTAATATCTGAGCAGTAGAAGCAGTGGGCATTGGAGCAAGTAAAAGGCTA 20662 Query 47448 TTTCTTACTCCAT 47460 || || | |||| Sbjct 20663 TTCCTCAGACCAT 20675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561042100182960