Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latrodectus_20hesperus_20[genbank_20GCA_5F000697925.1_202014-06-04] 151,814 sequences; 1,137,104,656 total letters Query= NC_017865.1 Length=42966 Score E Sequences producing significant alignments: (Bits) Value seq3139 129 2e-25 >seq3139 Length=44538 Score = 129 bits (142), Expect = 2e-25 Identities = 371/571 (65%), Gaps = 21/571 (4%) Strand=Plus/Plus Query 39341 GGTGACCGTACCTCGGCCACCAGCTTCGACGTGAACTGGGCGTTGAAGGGCGTCGAGAAA 39400 ||||||||||| ||| | | | || ||||| |||| | ||||| | | || ||| Sbjct 8704 GGTGACCGTACATCGTACGCGAACTATGACGTACACTGCGACCTGAAGCCCCTGGATAAA 8763 Query 39401 TCGGCCTCTATCAACTGCATCGGGATCACCGCTGCCCTCCAGGGCTACCGGGCCGACATC 39460 || ||| | ||| | || |||||||| || | ||||| | || || || | Sbjct 8764 TCCGCCAGCGTGGCATGCGTAGGTATCACCGCATCCTTGCAGGGTAAGCGTGCTGATCTG 8823 Query 39461 CTGATTCCCGACGACATCGAAACCACGAAGAACGGCCTCACCGCCACCGAGCGGGCCAAG 39520 |||||||| || || ||||| || ||||| ||||| || || || || | || | | Sbjct 8824 CTGATTCCAGATGATATCGAGACTACGAACAACGGTCTGACGGCTACAAACCGTGAAGTG 8883 Query 39521 CTGACGCGGCAGTCGCAGGAGTTCACCTCTATCTGTACCCACGGTAAGATTCTCTACCTG 39580 ||| | || || |||| ||| || | || ||| ||||| |||| ||| |||||| Sbjct 8884 CTGCTGTTGCGCTCCAAGGACTTCTCCGCGATTAATACGCACGGGAAGACTCTGTACCTG 8943 Query 39581 GGCACGCCGCAGTCCCGTGAGTCGATCTACAACGGTCTGCCGGCGCGGGGCTTCCTGATG 39640 || || |||||| || || |||||||| ||| ||||||| ||||| ||| Sbjct 8944 GGGACACCGCAGACCAAAGACAGTATCTACAAGACCCTGGCGGCGCGTGGCTTTGAGATT 9003 Query 39641 CGCATCTGGCCGGGCCGCTTCCCGACCCTGGATGAGCAGGAACGCTACGGTGACTGGCTC 39700 ||| | ||||| || ||| | || ||| | || || ||||||| ||| || Sbjct 9004 CGCGTATGGCCTGGTCGCGTACCTACCGTAGAAGAAGAGGAACGTTAC--------GCCG 9055 Query 39701 GCACCTTCCATCCTAGCGCGCATTGCCCGCCTGGAGGAGAGAGGCCACAAC---CCGCGT 39757 | || || || || ||| | |||| || | || | ||||| Sbjct 9056 GAACATTGGCTC----CGATGATT------CAGGAGATGATTCGGAACGGCGCGGCGCGT 9105 Query 39758 ACTGGCAAGGGCCTGGATGGCACTCGTGGCTGGGCTGCCGATCCGCAGCGCTACAACGAA 39817 || || |||||||| |||| || ||| || |||| || ||| |||| ||| Sbjct 9106 ACAGGTTTCGGCCTGGACGGCAACCGCGGCGAGGTAACCGACCCCATGCGTTACACGGAA 9165 Query 39818 GAGGACCTGCTCGACAAGGAGCTTGACCAAGGCCCCGAGGGCTTCCAGCTTCAGTACATG 39877 || || | ||| |||||| |||||| ||||| ||||| |||||| | ||||||||| Sbjct 9166 GATGATTTAATCGGCAAGGAACTTGACTTCGGCCCTGAGGGGTTCCAGTTGCAGTACATG 9225 Query 39878 CTGGACACCAGCCTCGCCGACGAGCAGCGTA 39908 ||||| || || || || | ||||||| Sbjct 9226 CTGGATACGTCACTAGCTGATGCACAGCGTA 9256 Score = 91.5 bits (100), Expect = 4e-14 Identities = 196/288 (68%), Gaps = 4/288 (1%) Strand=Plus/Plus Query 16450 GCTGTGGGCCGAGCAGGGCAAGCTATGCCCGCTCTGCGGTAAGCCCATCGATATCAGCGT 16509 ||||| ||| | ||||| || ||||| | ||||| |||||||| || ||| |||| | Sbjct 30738 GCTGTATGCCCAACAGGGTAATGTATGCGCCCTCTGTGGTAAGCCTATTGATTTCAGTAT 30797 Query 16510 GAAGGGCGAGGCGGTGATGGACCACGACCACGAGACGGGGCTGGTGCGGGGCGTCCTGCA 16569 ||||||||||| || ||||||||||| || || ||| | || || | ||||| Sbjct 30798 CAAGGGCGAGGCAGTCGCCGACCACGACCATATTACAGGTCTGATACGTGGTGCACTGCA 30857 Query 16570 TCGATCCTGTAACACCGCAGAAGGCAAGATCACGAACGCGGCGGGTTCCTGGGGATGC-A 16628 || ||||| || | ||||| || ||| | | ||||| || || |||||| ||| | Sbjct 30858 CCGCTCCTGCAATGCAGCAGAGGGTAAGGTGGCTAACGCCGCCGGCCGCTGGGG-TGCGA 30916 Query 16629 AGTCGATGAAATACACCGACATCATCCCCTACCTTCGTGCCCTCCTGACGTACCTGGAGG 16688 || ||| | ||| || |||| | || | || ||| ||| |||||||| Sbjct 30917 AGAGTATGCAGTACGACGCCATCCTGCCTTGGCTGGAGAACCTGCTGGCGTACCTGCGCA 30976 Query 16689 GGCCGAAGCATCC-GCTGATCTACCCCCTGCACAAGACCGACGAGGAG 16735 |||| |||| || | || ||||| ||||||||| ||| ||| Sbjct 30977 AGCCG-AGCACCCAGTACATTTACCCAACCCACAAGACCACCGATGAG 31023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137121951287104