Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latrodectus_20hesperus_20[genbank_20GCA_5F000697925.1_202014-06-04] 151,814 sequences; 1,137,104,656 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq2770 109 5e-19 >seq2770 Length=41231 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| || || ||||||||||| |||||||||||||| ||| ||||| Sbjct 19374 AATGCAAATCTTCGTTAAAACATTAACTGGTAAAACCATTACGTTAGAAGTAGAACCCAG 19433 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || ||| | | || | || ||||||| || || || || ||| | || |||| Sbjct 19434 TGACACGATAGAAAATGTTAAAGCAAAAATTCAA-GATAAGGAAGGAATTCCTCCCGATC 19492 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 | ||||| | |||||||| || |||||| | |||||| | ||| | | || |||| Sbjct 19493 AGCAGAGGTTAATCTTTGCAGGTAAACAACTTGAAGATGGTCGCACTCTATCAGACTATA 19552 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 | ||||||||||||||||| || || | ||| | || ||| |||| || || Sbjct 19553 ATATTCAAAAAGAATCTACCCTTCATCTTGTACTTAGGTTAAGAGGTGGTAT 19604 Score = 105 bits (116), Expect = 6e-18 Identities = 166/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| | || ||||| |||||||| || |||||| Sbjct 20287 ATGCAGATTTTTGTCAAAACTCTTACTGGTAAGACCATTACACTTGAGGTGGAACCAAGT 20346 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || |||| || || | || || ||||| || | || ||||| Sbjct 20347 GACACAATTGAAAATGTCAAAGCTAAGATTCAA-GATAAAGAAGGTATTCCTCCTGATCA 20405 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTAT 28730 ||||||||| || ||||| || || || | |||||| || | ||||| | |||||| Sbjct 20406 ACAGAGACTCATTTTTGCTGGTAAGCAGCTAGAAGATGGTCGCACACTAT--CAGATTAT 20463 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||||||||||||||| || ||| | ||||||||||| |||| || || Sbjct 20464 AACATTCAAAAAGAATCTACACTTCACCTTGTATTAAGATTGAGAGGTGGTAT 20516 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/134 (76%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 28632 AAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCG 28691 ||||||| | || || |||||||| | ||| ||||||||| | ||||||||||| Sbjct 22492 AAGCAAAGA-TCCAGGATAAAGAGGGCATTCCCCCTGATCAACAGCGTCTTATCTTTGCT 22550 Query 28692 GGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACT 28751 || || || |||||||| | ||| || | ||||||||||| ||||| ||||||||| Sbjct 22551 GGTAAGCAGCTGGAAGATGGCAGAACCTTGTCAGATTATAACATCCAAAAGGAATCTACT 22610 Query 28752 CTGCACATGGTATT 28765 ||||| |||| || Sbjct 22611 CTGCATTTGGTTTT 22624 Score = 91.5 bits (100), Expect = 1e-13 Identities = 111/150 (74%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 28634 GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGG 28693 ||||||| || ||||||||||| | || |||||| ||||| ||||| ||||| || Sbjct 21393 GCAAAAATTCAA-GACAAAGAGGGCATTCCACCAGATCAGCAGAGGCTTATTTTTGCTGG 21451 Query 28694 CAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCT 28753 |||||| | || ||| || ||| | | ||||| || || ||||||||||||||||| Sbjct 21452 TAAACAACTAGAGGATGGTAGAACATTATCAGATTACAATATACAAAAAGAATCTACTCT 21511 Query 28754 GCACATGGTATTAAGATTACGAGGAGGGAT 28783 || |||| | ||| | ||||||| || Sbjct 21512 TCATCTGGTGCTTAGACTTAGAGGAGGCAT 21541 Score = 89.7 bits (98), Expect = 4e-13 Identities = 163/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| || |||||||| || ||||| |||||| ||| || ||| Sbjct 19830 AATGCAGATTTTTGTGAAGACATTAACTGGGAAAACTATTACCTTAGAAGTAGAGCCTAG 19889 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | || | || || |||| || |||||||| ||| | || ||||| Sbjct 19890 TGATACAATTGAAAATGTTAAAGCTAAAATTCAA-GACAAAGAAGGAATTCCACCAGATC 19948 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTA 28729 ||||||| | || ||||| || || || | |||||| || | | ||| | || || Sbjct 19949 AACAGAGGTTAATTTTTGCTGGTAAGCAGCTTGAAGATGGTCGTACATTAT--CTGACTA 20006 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||| |||||||||||| |||| | || || || | ||||||| || Sbjct 20007 CAACATTCAGAAAGAATCTACTTTGCATCTCGTCTTGCGACTGAGAGGAGGTAT 20060 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||||||||| || ||||| ||||| |||||||| || || ||| ||||| Sbjct 20515 ATGCAAATATTCGTTAAAACTTTAACTGGTAAAACAATAACTCTTGAAGTAGAACCAAGT 20574 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || ||| | | || | || || |||| || || ||||| || | || |||||| Sbjct 20575 GATACGATAGAAAATGTTAAAGCCAAAATTCAA-GATAAAGAAGGGATTCCTCCAGATCA 20633 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || | ||||||||||| || || ||||| |||||| | ||| | | || ||||| Sbjct 20634 GCAACGTCTTATCTTTGCTGGTAAGCAATTAGAAGATGGCAGGACTTTATCAGACTATAA 20693 Query 28733 CATTCAAAAAGAATCTACT 28751 ||| ||||||||||| ||| Sbjct 20694 CATCCAAAAAGAATCAACT 20712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424617701947506