Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latrodectus_20hesperus_20[genbank_20GCA_5F000697925.1_202014-06-04] 151,814 sequences; 1,137,104,656 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq16555 147 5e-30 seq8063 105 2e-17 seq10263 91.5 3e-13 >seq16555 Length=11409 Score = 147 bits (162), Expect = 5e-30 Identities = 183/251 (73%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 110743 AGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCT 110802 ||||| ||| ||||||| || ||| | || ||||||||| | |||||||||||||| Sbjct 11025 AGAGACCTGGAGCATTTGCAATTTATTTAGAGCCTTGGCATGCTGATATATTTGAATTTC 11084 Query 110803 TAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAA 110862 | ||| | |||||| |||| ||||| ||| | ||| | ||||| || ||||| Sbjct 11085 TTGAATTAAAGAAAAATACAGGAAAAGAAGAGCAACGGGCAAGAGATTTGTTCTATGCCT 11144 Query 110863 TGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGT 110922 |||||||| ||||| | ||||||||||| ||| || || ||| |||||| |||||||| Sbjct 11145 TGTGGATTCCAGATCTTTTCATGAAACGAGTTGAAAAAGATGAAATGTGGAGTCTTATGT 11204 Query 110923 GTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACG 110982 ||||| || | |||||||| ||| | || || | |||||||| || || | Sbjct 11205 GTCCTGATGAATGCCCTGGTCTTCATGACTGCTGGGGCGAAAAATTTGAAGAACTCTATG 11264 Query 110983 AAAAATATGAA 110993 | || |||||| Sbjct 11265 AGAAGTATGAA 11275 Score = 89.7 bits (98), Expect = 1e-12 Identities = 122/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 110988 TATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATC 111047 |||||||| |||| | | | |||||| | |||||| | | |||| ||| Sbjct 8293 TATGAAAAGCAAGGTCTATATAGGAAACAAGTCAAAGCTCAGGCTGTATGGTATGCAATT 8352 Query 111048 CTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGAT-CATATTAATCG 111106 ||||||||||| ||||||| ||||||||||| || |||||||||||| ||| |||||| Sbjct 8353 ATTGAATCACAAATTGAAACAGGAACTCCTTACATGTTGTATAAAGATGCAT-GTAATCG 8411 Query 111107 CAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTG 111154 ||||| || || ||||| || ||||| |||| || || || || Sbjct 8412 TAAATCAAACCAGCAAAATTTGGGGACAATAAAGTGCAGCAACTTATG 8459 >seq8063 Length=21912 Score = 105 bits (116), Expect = 2e-17 Identities = 148/203 (73%), Gaps = 5/203 (2%) Strand=Plus/Minus Query 131433 TATTTCCAATTAAACATCACGATGTTTTCGATATGTATAAGAAATCTGTTGCGGCCTTCT 131492 ||||||||||| | | || ||| | | | |||||||| ||| | | || | || | Sbjct 13954 TATTTCCAATTGAGTACCAAGATATCTGGCAGATGTATAAAAAAGCAGAAGCTTCTTTTT 13895 Query 131493 GGACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAAATTAACCT-TG 131551 ||||||||||||| | ||| | | |||||| | |||| ||||||||||||| | || Sbjct 13894 GGACTGTTGAAGAAGTTGATTTATCTAAAGATTTGAATGACTGGGAAAAATTAAAATCTG 13835 Query 131552 AATGAAAAAGATTTTGTTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGATGGCATTGTT 131611 || |||||| ||||| | || | || | ||||| || || | ||||||||| ||||| Sbjct 13834 AA-GAAAAACATTTTATATCTCATATTTTAGCATTTTTTGCAGCAAGTGATGGAATTGTC 13776 Query 131612 ATTGAAAATCTTGTTATTAATTT 131634 | ||||||| ||| || ||||| Sbjct 13775 AATGAAAAT-TTGGTA--AATTT 13756 >seq10263 Length=32703 Score = 91.5 bits (100), Expect = 3e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 ||||| | ||||| | | ||||||||||||||||||| |||| | | ||| || Sbjct 16996 TTCAACCGACAACCTACTTTACATAAAATGTCTATGATGGGTCATCGTATAAGAGTTTTG 16937 Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGAT 305455 | | | || ||| || | ||| | |||| || || |||||||| ||||||||| Sbjct 16936 CCATGGTCCACTTTTAGAATGAATTTGAGTGTGACCACACCATATAATGCTGATTTTGAT 16877 Query 305456 GGAGATGAAATGAATATGCATGTACCTCAATCA 305488 ||||||||||||||| ||||||| || || ||| Sbjct 16876 GGAGATGAAATGAATCTGCATGTCCCACAGTCA 16844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1184504310395254