Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latrodectus_20hesperus_20[genbank_20GCA_5F000697925.1_202014-06-04] 151,814 sequences; 1,137,104,656 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq8063 183 4e-41 seq16555 116 5e-21 seq9609 107 3e-18 seq139299 98.7 1e-15 >seq8063 Length=21912 Score = 183 bits (202), Expect = 4e-41 Identities = 167/211 (79%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058 ||||||||||||| || ||||||||||| || ||||||||||| || | ||| |||| Sbjct 13763 CCAAATTTTCATTGACAATTCCATCACTTGCTGCAAAAAATGCTAAAATATGAGATATAA 13822 Query 40059 AATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 40118 ||| |||||| || | | | ||||| | ||||||||| | |||||| |||| ||| |||| Sbjct 13823 AATGTTTTTCTTCAGATTTTAATTTTTCCCAGTCATTCAAATCTTTAGATAAATCAACTT 13882 Query 40119 CTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATT 40178 ||||| | |||||||| || || ||||| ||||| ||||| | ||| ||||| | || | Sbjct 13883 CTTCAACAGTCCAAAAAGAAGCTTCTGCTTTTTTATACATCTGCCAGATATCTTGGTACT 13942 Query 40179 GTATTGGAAAAATAACAAATCTATTTGGATT 40209 |||||||| | |||||||||| |||||| Sbjct 13943 CAATTGGAAATACAACAAATCTACGTGGATT 13973 Score = 132 bits (146), Expect = 7e-26 Identities = 162/220 (74%), Gaps = 7/220 (3%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 ||||| ||||| |||||||| || ||||| || |||||||| ||||| | || || Sbjct 10434 TCATCCCTACTTATTAATTCATTGCTGAATGTAAGACCAGGCATAAGACCTCTTTTCTTC 10493 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 | |||||| || | |||||||| ||||| || || || ||||| ||||| ||||||||| Sbjct 10494 AACCAAAAGATAGATGCAAAAGAACCAGAGAAAAATATCCCTTCAACTGCAGCAAATGCA 10553 Query 39761 ACAAGTCTCTCTCCGTAACTTGTATCATTATGT-----ATCCACTTCTGTGCCCAATCAG 39815 || | || |||||| || | || || ||| ||||| || ||||| || | Sbjct 10554 ACTACTCGCTCTCCAAAAGAAGCAT--TTGTGTGACTGATCCAATTTAAGGCCCAGTCTG 10611 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 ||||| |||| |||||||| | ||||| |||||||| || Sbjct 10612 CTTTCCTCTTAACACAAGGTAGAGTTTCAATAGCATTGAA 10651 Score = 105 bits (116), Expect = 9e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 39878 TCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCC 39937 ||||| | |||||||| |||| || ||||||||||| ||||| | |||||||| || Sbjct 13318 TCTTTGATGTATGTATCAATTAGAAGGCTATACATTTCAGAATGTACATTTTCAATTGCT 13377 Query 39938 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCC 39997 || || ||||| ||||| ||||||||||| || | ||| || ||| || |||||||||| Sbjct 13378 ATTTGGAATCCATAAAAGCATCTTGCTTCTGTTACTTGCACTTCTTGACTAAATCTTTCC 13437 Query 39998 GCC 40000 || Sbjct 13438 ACC 13440 Score = 86.0 bits (94), Expect = 9e-12 Identities = 157/225 (70%), Gaps = 10/225 (4%) Strand=Plus/Plus Query 39422 TTTTTAAATCCTAATTCT-GAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCAT 39480 |||| | |||| |||||| | ||| ||||| ||||||||||||||||| ||| |||||| Sbjct 8973 TTTTCACATCCCAATTCTAGCAAT-AATCTGTCTGCAACAAATTCTATATATTGTTTCAT 9031 Query 39481 CATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTC 39540 | |||| |||||||| || | ||||||| ||| || || | || | || ||| Sbjct 9032 TAATTCATTGTTCATTCCAATTAAAGCCACTGGTAAAGCTTCTGTCAAGAATTGTTGTTC 9091 Query 39541 GATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGG----ATGCA 39596 || | || || || || ||||| | ||| | ||| | || |||| || | Sbjct 9092 AATAGCCACTGCATCAGTAATTAT---TTGTAC-AACTCTTTTTTCTGTGGGTTTATTAA 9147 Query 39597 ATAAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCT 39641 ||| || ||||||| | ||| || || |||||||| || |||| Sbjct 9148 CTAAGTGGCTAAACATGAGGCATGCAAAATCACAATGAAGACCCT 9192 >seq16555 Length=11409 Score = 116 bits (128), Expect = 5e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 ||| |||| || ||||| |||| | ||||| ||||||| |||||||| | Sbjct 11254 TTCAAATTTTTCGCCCCAGCAGTCATGAAGACCAGGGCATTCATCAGGACACATAAGACT 11195 Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA-A 69634 ||||| ||||| | | |||||||||||| || ||||| |||||||| | || ||| | Sbjct 11194 CCACATTTCATCTTTTTCAACTCGTTTCATGAAAAGATCTGGAATCCACA-AGGCATAGA 11136 Query 69635 AGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCA 69694 | | |||||| | | | ||||| |||||||||||||| || | || ||||| || | Sbjct 11135 ACAAATCTCTTGCCCGTTGCTCTTCTTTTCCTGTATTTTTCTTTAATTCAAGAAATTCAA 11076 Query 69695 TAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTC 69742 ||||||| |||||| || |||| ||| || || | |||| |||| Sbjct 11075 ATATATCAGCATGCCAAGGCTCTAAATAAATTGCAAATGCTCCAGGTC 11028 >seq9609 Length=20973 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| |||||||| ||||| | |||||||| || || |||||||| || | ||| Sbjct 20543 TGAAATTCTCCAGATAAAACTCTTCTTGTGTAAATGTTGCTAGTATATGGCTCAATGGAT 20602 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| || | || |||||||| || ||||| ||||| || || | || | ||| Sbjct 20603 TCATTATTACCTAATATCTGAGCAGTAGAAGCAGTGGGCATTGGAGCAAGTAAAAGGCTA 20662 Query 68839 TTTCTAAGACCATG 68852 || || |||||||| Sbjct 20663 TTCCTCAGACCATG 20676 >seq139299 Length=970 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| | ||||||||||| ||||| || ||||||||||||||||| || | | || Sbjct 88 AGTTCCGGAGTTAAATAATGTTGGAGAAGCATGAGTGAACCATTTTTCTGACATTAAATG 147 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||| |||||||| || | || ||||| ||||||||| | | || | |||||| Sbjct 148 GTAAGTTTCAATGGCAGCATCAATATCATCAGAATGAATTCCGACAGATACTCTCATCAA 207 Query 70110 CATATGCTGAGGTCGTTCTACC 70131 ||| |||||||| | ||| ||| Sbjct 208 CATGTGCTGAGGCCTTTCAACC 229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685605270342960