Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latrodectus_20hesperus_20[genbank_20GCA_5F000697925.1_202014-06-04] 151,814 sequences; 1,137,104,656 total letters Query= NC_027363.1 Length=41480 Score E Sequences producing significant alignments: (Bits) Value seq3139 149 2e-31 >seq3139 Length=44538 Score = 149 bits (164), Expect = 2e-31 Identities = 202/282 (72%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 8859 AGTAATCCAAATCTCCAGAATTTGCCTCAAGATGGTAATAGCAAAGTAAAACAGATGTTC 8918 || || || || |||||||| | || | |||||| | ||| || || ||||||||| Sbjct 26929 AGCAACCCGAACCTCCAGAACCTCCCACGAGATGGGACGTCCAAGGTTAAGCAGATGTTC 26988 Query 8919 ACTAGTCGTTACGGTGAACAAGGGTACATCATTGAGGTGGATTACTCAGCACTTGAAGTT 8978 || || || | |||||| | || ||||||||||||||||||||| ||||| |||||| Sbjct 26989 ACCAGCCGATTCGGTGAGAACGGTCGCATCATTGAGGTGGATTACTCCGCACTGGAAGTT 27048 Query 8979 GTAATGAGTTGTGTTCACACAGGTGATACAGAGTTACTGCAATTACTCCTTGATGGAACG 9038 |||||| |||| ||| | |||| || || ||| | | | | || || Sbjct 27049 GTAATGCTCTGTGCGATGACACGGGATATGGACTTGCTGGCGCTGTTACAGGCTGACACT 27108 Query 9039 GATATGCACTGTTATCGCCTAGCGTTTAAACTAGGTGAGGATTACGAGAGTGTGTACGAG 9098 || |||||||| ||||| || |||| || || || |||||| |||||||||| Sbjct 27109 GACATGCACTGCTATCGACTGGCGTACCGCCTGGGCGAATCGTACGAGGATGTGTACGAG 27168 Query 9099 AAGTGTCACAACGAGGAACACCCAGAGCATAAGCATTATAAG 9140 ||||| |||||||| |||||||| ||||| ||| | || ||| Sbjct 27169 AAGTGCCACAACGAAGAACACCCGGAGCACAAGAAGTACAAG 27210 Score = 95.1 bits (104), Expect = 3e-15 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 34969 GACTTTGCGTACGTGGGTATGCAGCTACTCGGGTTTAAACTCACACCAATGCAAGCGGAT 35028 ||||||||| | |||| |||| | ||||| || ||||||| ||||||||| |||| Sbjct 8410 GACTTTGCGGAGCTGGGGATGCGCTTCCTCGGCTTCGAACTCACGCCAATGCAAAGGGAT 8469 Query 35029 ATAGCATGGTACATGCAGCACTGTCCTAATAAGGCTATGGTATCTGCTCAACGAGGTGAA 35088 || || |||||||||||||| | || | || ||||| | || || || || || Sbjct 8470 ATTGCTTGGTACATGCAGCATGGCCCAAGGAACAGCATGGTGGCGGCACAGCGTGGGGAG 8529 Query 35089 GCTAAGAGTACACTAGCTGCGTTGTTCGCTGTATGGA 35125 || ||| || || |||||| |||||||||| |||| Sbjct 8530 GCCAAGTCCACCCTGGCTGCGCTGTTCGCTGTGTGGA 8566 Score = 93.3 bits (102), Expect = 1e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 35989 CATAAAATCATGGTGATAGACCCAGCGGGGAATGGTGGTGATGAGGTGTCCTTTGCTATT 36048 ||||| ||||||| || ||||| || || |||||| || || ||| |||| || Sbjct 9430 CATAAGGTCATGGTCATCGACCCGGCCGGTTGTGGTGGGGACGAAGTGGCCTTCGCGTGC 9489 Query 36049 GGTGGTGCTGCTAGCTCGTATATTCACCTGTTTACAGTAGGTGGGTTACGTGGTGGTATG 36108 ||||| || | |||||| |||||||||||| || ||||| ||| || ||| || Sbjct 9490 GGTGGGGCACTGAACTCGTACATTCACCTGTTTGGTGTTGGTGGTCTACAGGGAGGTTTG 9549 Query 36109 AGTACCGGTAACATTGACACACTTATAGACCTAGCTACTGAGTTTGATATCAAGGATATA 36168 | | ||| | | | || || ||||| ||| ||||| | ||||| |||||| Sbjct 9550 GTTGAGGAGAACCTGAATAAGCTCATTGACCTGGCTGAGGAGTTCGGTATCACGGATATT 9609 Query 36169 GTTATCGAATCAAACATGGGGCATGGTACTGTGAGTATGCT 36209 || || || |||||||||| || || || | |||||||| Sbjct 9610 GTGATGGAGGCAAACATGGGCCACGGCACGGCAAGTATGCT 9650 Score = 91.5 bits (100), Expect = 4e-14 Identities = 178/260 (68%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 8037 ATGTGCTGGGAGAGGATGGATGCTTTACTAGCTTTTGCTTACTGTGAGTGGTTTGGTATG 8096 |||| ||||||| | ||||| | || || || ||||||||||||| || ||| || Sbjct 26098 ATGTACTGGGAGCGTTGTGATGCGCTGCTGGCATTCGCTTACTGTGAGTTCTTCGGTCTG 26157 Query 8097 TACGTGAACATGCCAGTTGCTAAGGCTAATCAAGCCGAACAAGAAGCACAGATT--CTAG 8154 ||||| || | || || || || | |||||||| ||||| ||||| || Sbjct 26158 TACGTAGACCGGGACGTGGCGAACAAGAACCTGGCCGAACAGGAAGCGGAGATTGCGGAG 26217 Query 8155 TT-CTTAAAGAACACCTCCAAGAGTACATGCCTGATGACTTACCAGAGGAATTAGAGTTT 8213 || | | | || || || || | |||| | |||||||||| || |||| || Sbjct 26218 TTGCGT---GCGCAGCTACAGGAACTCTTGCCGAAGGACTTACCAGCTGAGCTAGAATTC 26274 Query 8214 AACTGGGGGAGTCTGTACCATGTATCAGCCTTGGTGTTTGGTGGTTCTGTTAAGTACAAA 8273 |||||||| || ||||| | || ||| |||||| |||||| | || |||||||| Sbjct 26275 AACTGGGGTAGCGACTACCACATGTCCGCCCTGGTGTATGGTGGGCCGGTGAAGTACAAG 26334 Query 8274 CACAAGGTATCTTACAACCC 8293 |||||||| | ||| |||| Sbjct 26335 CACAAGGTTCCGTACGACCC 26354 Score = 86.0 bits (94), Expect = 2e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 15379 AACAGGGTGGGTTGTGTGCGATATGTCTTAAACCTATTGACCTAAGTATCAAGGGTGAGA 15438 |||||||| | || || | ||| ||| |||||||| | ||||||||||| ||| Sbjct 30749 AACAGGGTAATGTATGCGCCCTCTGTGGTAAGCCTATTGATTTCAGTATCAAGGGCGAGG 30808 Query 15439 TGGTACTAGACCATTCACACGACACAGGATTAATACGAGGTGTACTGCATCGCTCTTGTA 15498 || ||||| || ||||| | ||||| |||| |||||| ||||| || | Sbjct 30809 CAGTCGCCGACCACGACCATATTACAGGTCTGATACGTGGTGCACTGCACCGCTCCTGCA 30868 Query 15499 ATAGCTCAGAAGGTAAGGTAGCTAATGCAGCAGGTAGGTGGGGTGCTAAGAGTATGGATT 15558 || |||| |||||||| ||||| || || || | |||||||| ||||||||| | | Sbjct 30869 ATGCAGCAGAGGGTAAGGTGGCTAACGCCGCCGGCCGCTGGGGTGCGAAGAGTATGCAGT 30928 Query 15559 AC 15560 || Sbjct 30929 AC 30930 Score = 80.6 bits (88), Expect = 7e-11 Identities = 89/119 (75%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 14623 GGGCATGGTACTAAGTTCTTCTGGTGGCAGATGTTAGCTGGAGATACCGCTGATAATGTA 14682 ||||| ||||| |||||||||||| ||||||| | || || || || ||||| || Sbjct 29782 GGGCACGGTACCAAGTTCTTCTGGGCGCAGATGCTGATGGGTGACACTGCAGATAACGTG 29841 Query 14683 AAAGGTATCTTGAAGTTACATGGCAAGAACTGTGGGGATATAGGAGCATATGAGGCACT 14741 ||||||||| | ||| | ||||| ||| |||||| | | | ||||| || |||||| Sbjct 29842 AAAGGTATCGTTAAGCTGCATGGGAAGGCCTGTGGCGCTGTTGGAGCGTACCTGGCACT 29900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132375323920056