Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latrodectus_20hesperus_20[genbank_20GCA_5F000697925.1_202014-06-04] 151,814 sequences; 1,137,104,656 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq8063 158 1e-33 seq57818 100 2e-16 seq2028 82.4 6e-11 >seq8063 Length=21912 Score = 158 bits (174), Expect = 1e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 43685 GAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTAC 43744 || ||||| ||| ||||| || ||||||||| | || || || || ||||| ||||| Sbjct 13976 GAGAATCCACGTAGATTTGTTGTATTTCCAATTGAGTACCAAGATATCTGGCAGATGTAT 13917 Query 43745 AAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCA 43804 ||||||||| | || || |||||||| | |||||||||||||| ||||||| || Sbjct 13916 AAAAAAGCAGAAGCTTCTTTTTGGACTGTTGAAGAAGTTGATTTATCTAAAGATTTGAAT 13857 Query 43805 CATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTT 43864 | ||| ||||||| | |||||||||||||||||||| |||| || |||||| Sbjct 13856 GACTGGGAAAAATTAAAATCTGAAGAAAAACATTTTATATCTCATATTTTAGCATTTTTT 13797 Query 43865 GCTGCGAGCGACGGGATAGTCAATGAAAATTTGGT 43899 || || || || || || ||||||||||||||||| Sbjct 13796 GCAGCAAGTGATGGAATTGTCAATGAAAATTTGGT 13762 Score = 136 bits (150), Expect = 3e-27 Identities = 165/224 (74%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 44038 ATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAA 44097 ||| || ||||| || ||||| ||||| |||| ||||||||||||||| | || Sbjct 10655 ATTATTCAATGCTATTGAAACTCTACCTTGTGTTAAGAGGAAAGCAGACTGGGCCTTAAA 10596 Query 44098 ATGGATAAATT---CAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154 ||||| | | |||||| |||||||||||| ||| | || || ||||| | || || Sbjct 10595 TTGGATCAGTCACACAAATGCTTCTTTTGGAGAGCGAGTAGTTGCATTTGCTGCAGTTGA 10536 Query 44155 AGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGAT 44214 ||| || || || || || || ||||| | || |||||||| |||||| ||||| | || Sbjct 10535 AGGGATATTTTTCTCTGGTTCTTTTGCATCTATCTTTTGGTTGAAGAAAAGAGGTCTTAT 10476 Query 44215 GCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAG 44258 |||||| | || || ||||| ||||||||| | ||||||| Sbjct 10475 GCCTGGTCTTACATTCAGCAATGAATTAATAAGTAGGGATGAAG 10432 Score = 113 bits (124), Expect = 4e-20 Identities = 89/107 (83%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| ||| || |||||||| |||| |||||||| || ||||| || || |||||| Sbjct 13424 CAAGAAGTGCAAGTAACAGAAGCAAGATGCTTTTATGGATTCCAAATAGCAATTGAAAAT 13365 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 | ||||| |||||||| || ||||| || ||||| ||||||||||| Sbjct 13364 GTACATTCTGAAATGTATAGCCTTCTAATTGATACATACATCAAAGA 13318 >seq57818 Length=7084 Score = 100 bits (110), Expect = 2e-16 Identities = 149/210 (71%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 19327 TTGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACA 19386 || |||| || ||||| | ||| ||||||| ||||| || || || ||| ||||| Sbjct 2762 TTAGGATTAAAGCATGTAAGGGGAATTTTGCTATATGGTCCTCCTGGCACTGGTAAAACT 2703 Query 19387 TTAATTGCGAGAGAACTTAGTAAATTACTTA---CAAAACAACCTCCCAAAATTGTAAAT 19443 ||||| || | || || | || | | | | | ||||| |||||||||||| Sbjct 2702 TTAATGGCACGTCAAATTGGGCAAATGTTGAATGCGAGGGAACCT---AAAATTGTAAAT 2646 Query 19444 GGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTT 19503 ||||| ||||| | |||||||||| || |||| |||| ||| | || | |||||| Sbjct 2645 GGTCCACAAATCCTTGATAAATATGTGGGAGAATCTGAAGCTAATATCCGTAGATTGTTT 2586 Query 19504 GCTGACGCTGAAGAAGAACAAAAACGTTTA 19533 || || |||||||||||| |||| ||| || Sbjct 2585 GCAGATGCTGAAGAAGAAGAAAAGCGTGTA 2556 >seq2028 Length=121951 Score = 82.4 bits (90), Expect = 6e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 40865 AGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACAC 40924 ||| |||||||||||||||||||| ||||| | |||||||||||| || |||||| Sbjct 76256 AGGAGATCTTGGTCCTGTTTATGGCTTTCAATGGCGACATTTTGGTGCTGAATATGTAGA 76315 Query 40925 TATGTACTCTGATTATACCAATAAAGGAATGGATCAATTA 40964 |||| |||||| | ||| ||||| | ||||||||| Sbjct 76316 TATGAGTAAAGATTATTCTAATGAAGGAGTTGATCAATTA 76355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396720613743070