Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latrodectus_20hesperus_20[genbank_20GCA_5F000697925.1_202014-06-04] 151,814 sequences; 1,137,104,656 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2770 122 8e-23 seq12692 105 6e-18 seq13140 87.8 2e-12 >seq2770 Length=41231 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||| || |||||| | || || || | || ||||||||||| ||||| Sbjct 20515 ATGCAAATATTCGTTAAAACTTTAACTGGTAAAACAATAACTCTTGAAGTAGAACCAAGT 20574 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| || | || ||| ||||||||||| |||||||| || || || ||||| Sbjct 20575 GATACGATAGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGGATTCCTCCAGATCAG 20634 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || || || ||||| ||||| | ||| | || || || ||| Sbjct 20635 CAACGTCTTATCTTTGCTGGTAAGCAATTAGAAGATGGCAGGACTTTATCAGACTATAAC 20694 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| || || || |||||||| |||||| | | || ||||| || Sbjct 20695 ATCCAAAAAGAATCAACTTTACATTTAGTTTTGAGGCTTCGTGGTGGTAT 20744 Score = 120 bits (132), Expect = 3e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||| | || ||||| | || ||||| ||||| |||| Sbjct 19146 CATGCAGATTTTCGTTAAAACCTTAACTGGCAAAACAATAACTCTAGAAGTTGAACAAAG 19205 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| || ||| |||||||||||||| ||||| || ||||| ||||| Sbjct 19206 TGACACCATCGAGAACGTTAAAGCTAAAATTCAAGACAAGGAAGGTATTCCACCTGATCA 19265 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| |||||||| | || || || ||| | || || | || |||| |||||||| Sbjct 19266 ACAACGTTTAATTTTTGCTGGTAAGCAACTTGAGGATGGACGTACTCTTTCAGATTACAA 19325 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 ||||| || || || ||| | ||||| ||| Sbjct 19326 TATTCAGAAAGAATCAACCCTTCATTTAGTT 19356 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || |||||||| ||||| || || ||| | || || | ||||| ||||| | Sbjct 20059 ATGCAAATCTTTGTAAAGACTCTTACTGGTAAGACAATAACATTAGAAGTTGAACCTAGC 20118 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || ||||||||||| |||||||| || ||||| |||||| Sbjct 20119 GACACCATTGAAAACGTAAAGGCTAAAATTCAAGATAAAGAAGGAATCCCACCTGATCAA 20178 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || |||| || || || ||| | ||||| | || | || || |||||| Sbjct 20179 CAGAGATTGATATTTGCTGGTAAGCAACTAGAAGATGGCCGTACTCTGTCTGACTACAAC 20238 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || || | || | ||| | || | || ||||| || Sbjct 20239 ATTCAAAAGGAATCTACTCTTCACCTAGTTCTCCGGCTTCGTGGTGGTAT 20288 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||||| || || ||| | ||||| ||||| |||||||| Sbjct 20287 ATGCAGATTTTTGTCAAAACTCTTACTGGTAAGACCATTACACTTGAGGTGGAACCAAGT 20346 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || |||||||| |||||||| || || || |||||| Sbjct 20347 GACACAATTGAAAATGTCAAAGCTAAGATTCAAGATAAAGAAGGTATTCCTCCTGATCAA 20406 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || || | ||||| || || | || ||||| ||| Sbjct 20407 CAGAGACTCATTTTTGCTGGTAAGCAGCTAGAAGATGGTCGCACACTATCAGATTATAAC 20466 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || | || | || || | ||| | ||||| || Sbjct 20467 ATTCAAAAAGAATCTACACTTCACCTTGTATTAAGATTGAGAGGTGGTAT 20516 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 27022 CTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAG 27081 |||||||||| ||||| ||||| || | ||||||| || ||| ||| || || | Sbjct 22447 CTATTACTCTAGAAGTTGAACCCAGTGATACCATTGAGAATGTAAAAGCAAAGATCCAGG 22506 Query 27082 ACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAG 27141 | ||||| ||||| || || |||||||||||| | || | || || || || |||||| Sbjct 22507 ATAAAGAGGGCATTCCCCCTGATCAACAGCGTCTTATCTTTGCTGGTAAGCAGCTGGAAG 22566 Query 27142 ACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGC 27201 | | ||| | || ||||| ||||| |||||||| || || | ||||||||||||| Sbjct 22567 ATGGCAGAACCTTGTCAGATTATAACATCCAAAAGGAATCTACTCTGCATTTGGTTTTGC 22626 Query 27202 GTTTGCGGGGTGG 27214 | | || ||||| Sbjct 22627 GACTTCGTGGTGG 22639 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || | || || || ||||||| | ||||| || || Sbjct 19831 ATGCAGATTTTTGTGAAGACATTAACTGGGAAAACTATTACCTTAGAAGTAGAGCCTAGT 19890 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| |||||||||||||||||||| || ||||| |||||| Sbjct 19891 GATACAATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGAATTCCACCAGATCAA 19950 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | ||||| | || || || || | ||||| || || | || || |||||| Sbjct 19951 CAGAGGTTAATTTTTGCTGGTAAGCAGCTTGAAGATGGTCGTACATTATCTGACTACAAC 20010 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 ||||| || || || || || ||| | || ||||| Sbjct 20011 ATTCAGAAAGAATCTACTTTGCATCTCGTCTTGCG 20045 Score = 107 bits (118), Expect = 2e-18 Identities = 154/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| || || || || || | || || | || || || |||| Sbjct 19603 ATGCAGATCTTTGTAAAGACACTTACTGGTAAAACAATAACATTAGAGGTTGA---GTCC 19659 Query 27048 ---GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 ||| | ||||| | || ||| |||||||||||| |||||||||||||| || ||| Sbjct 19660 AGTGACACAATTGAAAATGTAAAAGCAAAAATTCAAGATAAAGAAGGCATACCTCCTGAT 19719 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || || ||| | || | || || ||||| | ||||| | || |||| || || Sbjct 19720 CAGCAACGTCTCATTTTTGCTGGTAAACAGCTAGAAGATGGGCGTACGCTTTCAGACTAT 19779 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 ||||||||||| || || || | || ||||||||| Sbjct 19780 AACATTCAAAAAGAATCTACACTGCACTTGGTTTTG 19815 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| | || || || | ||||| | ||||| ||||| Sbjct 19375 ATGCAAATCTTCGTTAAAACATTAACTGGTAAAACCATTACGTTAGAAGTAGAACCCAGT 19434 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || ||| |||||||||||| || ||||| || || |||||||| Sbjct 19435 GACACGATAGAAAATGTTAAAGCAAAAATTCAAGATAAGGAAGGAATTCCTCCCGATCAG 19494 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | ||||| | || || |||||| | ||||| || || | || || || || Sbjct 19495 CAGAGGTTAATCTTTGCAGGTAAACAACTTGAAGATGGTCGCACTCTATCAGACTATAAT 19554 Query 27168 ATTCAAAAGGAGTCGACCTTACAT 27191 |||||||| || || ||| | ||| Sbjct 19555 ATTCAAAAAGAATCTACCCTTCAT 19578 Score = 82.4 bits (90), Expect = 7e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 || || ||| |||||||| | ||||| || || || | || || | || || | Sbjct 21336 ACAGGAAAGACTATTACTTTAGAAGTTGAGCCTAGTGATACTATAGAAAATGTGAAGGCA 21395 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 ||||||||||||||||| ||||| ||||| ||||| ||| | | || | || || ||| Sbjct 21396 AAAATTCAAGACAAAGAGGGCATTCCACCAGATCAGCAGAGGCTTATTTTTGCTGGTAAA 21455 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 ||| | || || || || | || |||||||| || ||||| || || || | ||| Sbjct 21456 CAACTAGAGGATGGTAGAACATTATCAGATTACAATATACAAAAAGAATCTACTCTTCAT 21515 Query 27192 TTGGT 27196 |||| Sbjct 21516 CTGGT 21520 >seq12692 Length=15378 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 135648 TAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGT 135707 |||||||||||||||| ||||| || |||| |||||||||||| || || ||||| Sbjct 3599 TAGGTTGTATGTGGTCAATTTGTGGAATACATGATCAAGGATGGGCAGAACGTGCAGTGT 3540 Query 135708 TTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTAAATTTGT 135767 |||| || || || || ||||| || | |||||| |||||||||| |||||||| | Sbjct 3539 TTGGAAAAATCCGTTACATGAATTACAAAGGTTGTCAAAGAAAATTTGATGTAAATGAAT 3480 Query 135768 ACGTGAGAAAATATAATAAAAAC 135790 | | |||| ||||| ||||| Sbjct 3479 TCATTAGAAGATATAGAGAAAAC 3457 >seq13140 Length=15713 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC 27148 |||||| ||||| |||||||||||||| || | || || || ||||||||||| | Sbjct 15482 AGGCATTCCACCTGATCAACAGCGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGAAG 15423 Query 27149 GACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCG 27208 || | || || ||||| ||||| || || || || |||||||| ||| | |||||| | Sbjct 15422 AACATTATCTGACTACAATATTCAGAAAGAATCTACATTACATTTAGTTCTTCGTTTGAG 15363 Query 27209 GGGTGG 27214 ||| || Sbjct 15362 GGGAGG 15357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434093066225280