Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Latrodectus_20hesperus_20[genbank_20GCA_5F000697925.1_202014-06-04] 151,814 sequences; 1,137,104,656 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2770 140 2e-28 seq13140 89.7 3e-13 >seq2770 Length=41231 Score = 140 bits (154), Expect = 2e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||||||| | || || ||||| || ||||| |||||||| | Sbjct 19147 ATGCAGATTTTCGTTAAAACCTTAACTGGCAAAACAATAACTCTAGAAGTTGAACAAAGT 19206 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || ||||| | |||||| ||||| |||||| | || || ||||| Sbjct 19207 GACACCATCGAGAACGTTAAAGC-TAAAATTCAAGACAAGGAAGGTATTCCACCTGATCA 19265 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| |||||||| ||||| || || ||||| || || | ||| ||| | |||||||| Sbjct 19266 ACAACGTTTAATTTTTGCTGGTAAGCAACTTGAGGATGGACGTACTCTTTCAGATTACAA 19325 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || ||||| || || | ||||||||| | ||| | |||| ||| Sbjct 19326 TATTCAGAAAGAATCAACCCTTCATTTAGTTCTCAGGCTAAGAGGTGGA 19374 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||||||||| | || || ||||| || ||||| ||||| || | | Sbjct 20515 ATGCAAATATTCGTTAAAACTTTAACTGGTAAAACAATAACTCTTGAAGTAGAACCAAGT 20574 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | | |||| ||||| | |||||| || |||||||| | || |||||||| Sbjct 20575 GATACGATAGAAAATGTTAAAGC-CAAAATTCAAGATAAAGAAGGGATTCCTCCAGATCA 20633 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || ||||| || || ||| | ||||| | | |||||| || || || Sbjct 20634 GCAACGTCTTATCTTTGCTGGTAAGCAATTAGAAGATGGCAGGACTTTATCAGACTATAA 20693 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| |||||||| || || |||||||||||||| ||| | || || || Sbjct 20694 CATCCAAAAAGAATCAACTTTACATTTAGTTTTGAGGCTTCGTGGTGG 20741 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||||||||| | || || ||||| || || | ||||| || ||| Sbjct 19374 AATGCAAATCTTCGTTAAAACATTAACTGGTAAAACCATTACGTTAGAAGTAGAACCCAG 19433 Query 23670 GGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | | |||| ||||| | ||||||| || || ||||| | || || |||| Sbjct 19434 TGACACGATAGAAAATGTTAAAGC-AAAAATTCAAGATAAGGAAGGAATTCCTCCCGATC 19492 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | ||||| ||||| || |||||||| ||||| | |||||| || || || | Sbjct 19493 AGCAGAGGTTAATCTTTGCAGGTAAACAACTTGAAGATGGTCGCACTCTATCAGACTATA 19552 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 | || |||||||| || || | ||| | || | ||||| |||| || Sbjct 19553 ATATTCAAAAAGAATCTACCCTTCATCTTGTACTTAGGTTAAGAGGTGG 19601 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || || || | || || ||||| || || | ||||| || | | Sbjct 19830 AATGCAGATTTTTGTGAAGACATTAACTGGGAAAACTATTACCTTAGAAGTAGAGCCTAG 19889 Query 23670 GGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || ||| |||| ||||| | |||||| ||||||||||| | || ||||||| Sbjct 19890 TGATACAATTGAAAATGTTAAAGC-TAAAATTCAAGACAAAGAAGGAATTCCACCAGATC 19948 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 ||||| | ||||| ||||| || || || || ||||| | || || ||| || |||| Sbjct 19949 AACAGAGGTTAATTTTTGCTGGTAAGCAGCTTGAAGATGGTCGTACATTATCTGACTACA 20008 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||| || ||||| || || || ||| | || || | || ||||||| Sbjct 20009 ACATTCAGAAAGAATCTACTTTGCATCTCGTCTTGCGACTGAGAGGAGG 20057 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| || || || || || || || || || || || | | Sbjct 20287 ATGCAGATTTTTGTCAAAACTCTTACTGGTAAGACCATTACACTTGAGGTGGAACCAAGT 20346 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | ||| || ||| || ||||||||| | || || |||||| Sbjct 20347 GACACAATTGAAAATGTCAAAGCTAAGATTCAAGATAAAGAAGGTATTCCTCCTGATCAA 20406 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| || || || || ||||| | ||||| || ||||| ||| Sbjct 20407 CAGAGACTCATTTTTGCTGGTAAGCAGCTAGAAGATGGTCGCACACTATCAGATTATAAC 20466 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| || ||| | || | || ||||| ||| |||| || Sbjct 20467 ATTCAAAAAGAATCTACACTTCACCTTGTATTAAGATTGAGAGGTGG 20513 Score = 86.0 bits (94), Expect = 4e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 23638 GGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAA 23697 || ||||| || ||||| |||||||| ||| || || |||| | ||||| ||| Sbjct 22440 GGTAAAACTATTACTCTAGAAGTTGAACCCAGTGATACCATTGAGAATGTAAAAGCAAAG 22499 Query 23698 ATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAA 23757 || || ||||| || | || || |||||||||||| | || ||||| || || || Sbjct 22500 ATCCAGGATAAAGAGGGCATTCCCCCTGATCAACAGCGTCTTATCTTTGCTGGTAAGCAG 22559 Query 23758 CTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTA 23817 |||||||| | | || || ||||| ||||| ||||| || || || | ||||| Sbjct 22560 CTGGAAGATGGCAGAACCTTGTCAGATTATAACATCCAAAAGGAATCTACTCTGCATTTG 22619 Query 23818 GTTTT 23822 ||||| Sbjct 22620 GTTTT 22624 Score = 82.4 bits (90), Expect = 5e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAA 23694 || ||||| || || ||| | |||||||| | | || ||| | |||| | || | Sbjct 21336 ACAGGAAAGACTATTACTTTAGAAGTTGAGCCTAGTGATACTATAGAAAATGTGAAGGCA 21395 Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754 |||||| |||||||| || | || |||||||| ||| | | || ||||| || ||| Sbjct 21396 AAAATTCAAGACAAAGAGGGCATTCCACCAGATCAGCAGAGGCTTATTTTTGCTGGTAAA 21455 Query 23755 CAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807 ||||| || || | | || ||| |||||||| ||||||||||| || || Sbjct 21456 CAACTAGAGGATGGTAGAACATTATCAGATTACAATATACAAAAAGAATCTAC 21508 >seq13140 Length=15713 Score = 89.7 bits (98), Expect = 3e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 23719 CCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTA 23778 || || |||||||||||||| || ||||| || || ||| ||||||| | | | || ||| Sbjct 15475 CCACCTGATCAACAGCGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGAAGAACATTA 15416 Query 23779 GGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| || || ||||| || ||||||||||||||| | | ||| | ||||| Sbjct 15415 TCTGACTACAATATTCAGAAAGAATCTACATTACATTTAGTTCTTCGTTTGAGGGGAGG 15357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337384203441512