Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq27661 201 1e-46 >seq27661 Length=34041 Score = 201 bits (222), Expect = 1e-46 Identities = 318/456 (70%), Gaps = 0/456 (0%) Strand=Plus/Minus Query 16663 AACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAG 16722 ||||||| |||| || || | ||| |||||| ||||| || ||||| || || || Sbjct 22441 AACACCCGCCTTTTGATATTCCCCAACCTTTTTTTCAAAAAAATTGGTTTTACCATCAAG 22382 Query 16723 AGATATATTCTCCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAG 16782 || ||||| ||||| |||||||| ||||| || | | ||||| | | || Sbjct 22381 TGAAATATTTTCCATAAAATCAAAGGGATTCTCAGTTAGGTAAATTTTCGGACAATTAAG 22322 Query 16783 TTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCAT 16842 || | | | |||||| || ||||||| |||||||| ||| | || |||||||| Sbjct 22321 CTCTACAAGAAGTCTATCTGCAACAAATTTAATATATTGCACCATGGAATCACAGTTCAT 22262 Query 16843 TCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTC 16902 ||| | | || || || || || || || | |||| || || |||| || || Sbjct 22261 TCCCAACATTCGAACGGGGAGTGCCTCAGTTAGAAATTCACTTTCAATCGCAACAGCCTC 22202 Query 16903 CTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAG 16962 |||||| ||| || || |||| || |||| ||| ||| ||||||| || Sbjct 22201 ACGAATAATTTCGACAATACGAGCCACGGATGGCTTATGAGCAAGGTGTCTAAACATAAG 22142 Query 16963 ACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAA 17022 ||| || ||||| ||| |||||||||||||| ||||||||||| ||||| || | Sbjct 22141 ACAGGCAAAATCTGTATGCAATCCCTCGTCTCTAGATATAAGTTCGTTTGAAAAGGTGAG 22082 Query 17023 CCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAA 17082 |||||||| ||| |||||||||||||| ||||| | || || ||||| |||||||| Sbjct 22081 ACCGGGCATGAGTCCACGTTTCTTTAACCAGAATATGGAAGCAAATGACCCTGAAAAGAA 22022 Query 17083 TATACCCTCGACGGATGCAAACGCGATTAATCGTTC 17118 || |||||||||| ||||| || || | ||| || Sbjct 22021 GATGCCCTCGACGGCAGCAAAGGCAATAATTCGATC 21986 Score = 107 bits (118), Expect = 2e-18 Identities = 203/294 (69%), Gaps = 5/294 (2%) Strand=Plus/Minus Query 17232 TTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCT 17291 |||| || || || || |||| ||||||||||||||| |||||||| || || || | Sbjct 21801 TTATGTAAGTGTCTATAAGTAATGAGTACATTTCGGAGTGAATGTTCTCGATTGCAATTT 21742 Query 17292 GAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC-ACGTAGAATCGTTCCGCT 17350 |||| ||||| || |||| || |||| | || |||||| ||| |||| ||| | Sbjct 21741 GAAACCCGTAGAAACATCTCGCCTCCGTAACCTGTACTTCCTGTGTA-AATCTCTCCACA 21683 Query 17351 AGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAA 17410 | || |||||||| || ||||| ||| |||||||| ||||| | | || || Sbjct 21682 ATGTTCTCGTTCACAATTCCGTCCGACGCAGCGAAAAATGCCAAAACTCGTGATATAAAG 21623 Query 17411 TATTTTTCGTC-CGGTGTAAGAACGC--GCCAGTCCTTTAAATCTTTGGATATATCCACT 17467 || ||| || | || | | |||||| | || || ||| | |||||| Sbjct 21622 TACCGTTCCTCATCATTCAATTTCTCCTCCCAGTCGATCAAGTCCTTGCTGAGGTCCACT 21563 Query 17468 TCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCA 17521 || || |||||||| || || || ||||| |||||||| |||||||||||| Sbjct 21562 TCCTCCACAGTCCAAAAGCTTGCTACGGCCTTCTTATACATGTTCCAAATATCA 21509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517007579002200