Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq27661 192 6e-44 >seq27661 Length=34041 Score = 192 bits (212), Expect = 6e-44 Identities = 321/460 (70%), Gaps = 8/460 (2%) Strand=Plus/Minus Query 15901 AACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAA 15960 ||||||| |||| || || | ||| |||||| || || || ||||| || || | Sbjct 22441 AACACCCGCCTTTTGATATTCCCCAACCTTTTTTTCAAAAAAATTGGTTTTACCATCAAG 22382 Query 15961 AGATATATTTTCCATAAAATCAAAGGGATT---AGT-AGCTGAAAATATCTTAGAGTACC 16016 || |||||||||||||||||||||||||| ||| || | ||| | || | | | Sbjct 22381 TGAAATATTTTCCATAAAATCAAAGGGATTCTCAGTTAGGT-AAATTTTCGGACAATTA- 22324 Query 16017 CCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAAT 16076 || || || | ||||||||| ||||||| |||||||| ||| | || || | Sbjct 22323 --AGCTCTACAAGAAGTCTATCTGCAACAAATTTAATATATTGCACCATGGAATCACAGT 22266 Query 16077 TAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCG 16136 | ||||| | | ||| || || || || | |||| ||||| ||| ||| |||| | Sbjct 22265 TCATTCCCAACATTCGAACGGGGAGTGCCTCAGTTAGAAATTCACTTTCAATCGCAACAG 22206 Query 16137 CTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACA 16196 | || ||| || ||| || | | || || |||| |||||| |||||| Sbjct 22205 CCTCACGAATAATTTCGACAATACGAGCCACGGATGGCTTATGAGCAAGGTGTCTAAACA 22146 Query 16197 TTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAG 16256 | ||||| || || || ||| | ||| |||||||| ||||||||||| ||||| | Sbjct 22145 TAAGACAGGCAAAATCTGTATGCAATCCCTCGTCTCTAGATATAAGTTCGTTTGAAAAGG 22086 Query 16257 TTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAA 16316 | | || ||||| ||| |||||||||||||||||||| | |||||||||||| |||| Sbjct 22085 TGAGACCGGGCATGAGTCCACGTTTCTTTAACCAGAATATGGAAGCAAATGACCCTGAAA 22026 Query 16317 AGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTC 16356 |||| || ||||| || | ||||| || || | ||| || Sbjct 22025 AGAAGATGCCCTCGACGGCAGCAAAGGCAATAATTCGATC 21986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510882752767800