Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq46208 131 1e-25 >seq46208 Length=8390 Score = 131 bits (144), Expect = 1e-25 Identities = 388/596 (65%), Gaps = 2/596 (0%) Strand=Plus/Minus Query 18609 AATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGTTG 18668 |||| ||||| | ||||||| || ||||||| || | ||| ||||| || Sbjct 6116 AATGTTTTTCCATTACTAACTACCAAAACTGTTTTTATAAGAGGAATCGCAGAAGAATTA 6057 Query 18669 TTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACACATA 18728 || |||||||| || || ||||| || | || || || | ||| | | ||| Sbjct 6056 TTTTGGTTTATTCGAGGATCAACAAATGCAAATGAGCTTAAGGAAAAAAAGGTGAGGATA 5997 Query 18729 TGGGATATATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACACACG 18788 |||||| | || || || ||||| || || | || || || ||| | | Sbjct 5996 TGGGATGGAAACTCCTCAAGGGAATTTTTAGATTCTATGGGATTTACCAACAGAGAAGAG 5937 Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 || || || || || | || || ||||| ||| | |||| |||||||||||| || | Sbjct 5936 GGAGATCTCGGTCCAGTATATGGATTCCAATGGCGTCATTATGGAGCGGAATACAATAAT 5877 Query 18849 TGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATT 18908 || | |||| | | ||||| | || ||||| |||||| | || || Sbjct 5876 ATGCACACTGACTACCAAGGGAAAGGAGTTGACCAGCTTTCTCATGTTATCAAGACTATA 5817 Query 18909 AAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCC 18968 ||| |||||| | || || || | || | | |||||||| || ||||| ||| Sbjct 5816 AAAGATAACCCAAACGATCGTCGTATATTAATGTGCGCCTGGAATCCTAAAGATATTCCC 5757 Query 18969 TTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTA 19028 | |||| || || || |||||| || ||| ||||| ||||| || |||||| || Sbjct 5756 CTGATGGCTCTTCCCCCTTGTCACTGTTTGGCTCAATTTTATGTTGCCAATGGTGAACTA 5697 Query 19029 TCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCT 19088 || || ||| |||| || |||| | |||||||| | || ||||| || ||||| || Sbjct 5696 TCTTGTCAATTATATCAACGATCTGCAGATATGGGATTAGGAGTACCTTTTAACATAGCA 5637 Query 19089 GGATATGCACTTCTTACCTA-CATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTT 19147 | ||| | | ||||| | | || | || ||||| || || ||| | || || || Sbjct 5636 AGTTATTCTC-TCTTAACGATTATGTTGGCCCATGTGACCAATCTCAAACCTGGTGAATT 5578 Query 19148 AATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAG 19203 |||||||| | || |||||||| | ||| ||||| || ||||| ||| ||| Sbjct 5577 CATTCATACCTTAGGTGATGCACACGTATACAACAATCACATTGATGCCTTAGAAG 5522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399099073357425