Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq46208 210 2e-49 >seq46208 Length=8390 Score = 210 bits (232), Expect = 2e-49 Identities = 434/634 (68%), Gaps = 10/634 (2%) Strand=Plus/Plus Query 101676 TTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACT 101735 || |||| ||||||||||||| || | ||| ||||| |||| ||||| || || | Sbjct 5523 TTCTAAG-GCATCAATGTGATTGTTGTATACGTGTGCATCACCTAAGGTATGAATGAATT 5581 Query 101736 CTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAA 101795 | ||||| ||||| || ||||| || | ||| ||||| |||||||| || || | Sbjct 5582 CACCAGGTTTGAGATTGGTCACATGGGCCAACATAATCGTTAAGAGAGAATAACTTGCTA 5641 Query 101796 TGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCT 101855 ||||||| || |||||||| |||||||| || |||| |||||| | |||||| || || | Sbjct 5642 TGTTAAAAGGTACTCCTAATCCCATATCTGCAGATCGTTGATATAATTGACAAGATAGTT 5701 Query 101856 TTCCATCACAGACATAAAATTGACTTAATACA-TGACAAGGCGGCAACACCATTTTAGGA 101914 |||| |||||||||||| || ||| |||||||| || | |||| ||| Sbjct 5702 CACCATTGGCAACATAAAATTGAGCCAA-ACAGTGACAAGGGGGAAGAGCCATCAGGGGA 5760 Query 101915 ATGTCTGAAACATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATA 101974 || ||| | |||||| || |||||||| || | | ||| | ||||| ||||||| Sbjct 5761 ATATCTTTAGGATTCCAGGCGCACATTAATATACGACGATCGTTTGGGTTATCTTTTATA 5820 Query 101975 GTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTCCTTTATAATC-GCGCCCAACACC 102033 || | || | || | ||||||||||||| |||| || || | | | | | Sbjct 5821 GTCTTGATAACATGAGAAAGCTGGTCAACTCCTTTCCCTTGGTAGTCAGTGTGC-ATATT 5879 Query 102034 TTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTC 102093 || ||||| ||||| |||| | ||| || |||||||| || || || |||||||| || Sbjct 5880 ATTGTATTCCGCTCCATAATGACGCCATTGGAATCCATATACTGGACCGAGATCTCCCTC 5939 Query 102094 ATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAAT 102153 ||||||| ||| || | |||||||||| || || || ||||||| || Sbjct 5940 TTCTCTGTTGGTAAATCCCATAGAATCTAAAAATTCCCTTGAGGAGTTTCCATCCCATAT 5999 Query 102154 GTGCACGCCAGCTGCTGATAGCTC-TTTGCTGTCAGTAGATCCTCTGATAAACCACAACA 102212 ||| | | ||||| ||||| | || ||||||| |||||||| || | Sbjct 6000 CCTCACCTTTTTTTCCTTAAGCTCATTTGC-ATTTGTTGATCCTCGAATAAACCAAAATA 6058 Query 102213 GTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAATTCAT--T 102270 |||||| | | ||||| ||| || | || ||||||| | |||||| ||| | Sbjct 6059 ATTCTTCTGCGATTCCTCTTATAAAAACAGTTTTGGTAGTTAGTAATGGAAAAACATTAT 6118 Query 102271 TTC-TAAACTAAACCTAGACTGTGTTCCAAAAAT 102303 ||| |||| ||| || ||| | |||||||| Sbjct 6119 TTCGTAAAGAAAATCTCATCTGGGCGCCAAAAAT 6152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360885045379415