Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq58440 208 9e-49 seq27661 172 7e-38 seq4608 91.5 2e-13 >seq58440 Length=15377 Score = 208 bits (230), Expect = 9e-49 Identities = 578/880 (66%), Gaps = 5/880 (1%) Strand=Plus/Minus Query 53749 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 53808 ||||| || ||| || || || | |||| || || || ||||| || || | |||||| Sbjct 5280 ATATTCTACTATTTCGGTACATAAATTAGAGCATTTTATAGTTCCCAAGTTCTTTTGATT 5221 Query 53809 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGA 53868 | || || || | ||||| || | ||| | || || ||||||||||| || || Sbjct 5220 AGATTTCCGATTGCAAGAGTCCTTGTATAACATGTAGGGAGTCCCAGTTTCAATTTGCGA 5161 Query 53869 TTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCT 53928 ||| || || || | ||| || | |||| || || || | ||||| Sbjct 5160 TTCAATGATGGCCTCCCACACTTTATGAGCAGGTACCTGCCGCCTGAATTTGTTTTCATC 5101 Query 53929 TTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACA 53988 || ||| ||| | | ||||| || || |||||||||| || || || ||||| Sbjct 5100 CTCATATTTAAGATATAGTTTCTCAAAATCTTCACCCCAAACATCATCTAACCCTGGACA 5041 Query 53989 TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATC 54048 ||||| |||||||| | ||| || || || | |||||||||||| || | ||| Sbjct 5040 TTCATGAGGACACATAAGGCTCCAAATACCATCCTCTTCCACTCGTTTCATGAATAAATC 4981 Query 54049 AGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 54107 ||||||||||||||| ||| |||| ||| || | || || || || || ||||| | Sbjct 4980 AGGAATCCAAAGAGC-ATAGAATAAATCCCTTGCCCTTTGCTCTTCAGCCCCCGTATTTT 4922 Query 54108 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAA 54167 | || || || || | | || ||| | |||||| ||||| || || || | | Sbjct 4921 TACGTAGTTCTAGAAAATCAAAAACATCCGCATGCCAAGGTTCTAAATAAATTGCAAATG 4862 Query 54168 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 54227 | ||||||| |||||| || || || || | ||| | || || |||||| |||||| | Sbjct 4861 CGCCAGGCCTTTTGTTACCACCTTGGTCAACATATTTCGCCGTATTATTAAAAACTCGAA 4802 Query 54228 ACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 54287 ||| || | ||| ||||| || ||||||||||| | ||||| || | || | Sbjct 4801 GCATGGGTACAATCCCATTAGAGTATCCATTGGTCCCCGCAATATAAGAACCTTTTGCTC 4742 Query 54288 GAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 54347 ||||| | ||| | ||| ||||| || || ||| || || | ||| | ||| Sbjct 4741 GAATACAATGAATATTAATACCGATCCCTCCAGCGGATTTTGAAATAATTGCAGTTTGTT 4682 Query 54348 TTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTA 54406 | | |||||||| ||||| || || ||| ||| ||||| || ||| ||||| Sbjct 4681 TCAGAGTATCATAAATGCCTTCAATGGAGTCAGAGGACATCGTTAA-TAAAAAGCAGCTT 4623 Query 54407 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 54466 || | ||| | || | ||||| || | || ||||| || || || || | Sbjct 4622 GATAATTGAGGTTTTGGTGTAGCAGCATTGAAAAGTGTGGGAGAGGCATGTGTGAAATAC 4563 Query 54467 TTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCT 54526 || ||| || || ||||| |||| ||| | || ||||| | ||||| ||| Sbjct 4562 CCTTGAGAGAGAAGGTTGTAGGTCTTGATCACACCTTCAATATCTTCTCCGTGAATACCT 4503 Query 54527 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGC 54586 || | ||| | ||| | ||| || || || |||||||| | || ||| ||||| || Sbjct 4502 ACAGAGACTCTCATCAGCATATGTTGTGGCCTTTCAACCACTTTTTTGCCAATTTTGAGT 4443 Query 54587 AAGTAGGATTTTTCCAAAGTTTTAAAAC-CAAAATAGTTG 54625 |||||| | ||| | |||||| || | |||| ||||| Sbjct 4442 AAGTAGCTTCGTTCTAGAGTTTTGAACCTGAAAAGAGTTG 4403 Score = 197 bits (218), Expect = 2e-45 Identities = 454/687 (66%), Gaps = 10/687 (1%) Strand=Plus/Minus Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858 ||||||| |||||| ||||||| | | || | ||| ||||| ||||| ||||| || Sbjct 6368 TTGTCCACTGTGAACTGAATGGCACTAGCCGCTGCTTTGGTACGAAGATAATACATCCCT 6309 Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918 ||||| | ||||| |||| ||||| |||||||| ||| ||||| || | || Sbjct 6308 GTTTTCAATCCGAGTTTCCAACCGTAGAAATGCATGGATGTAAGTTTTCCGTAGTTAGGC 6249 Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978 | ||| ||||| || |||| |||||||||||||| || || || || | || |||||| Sbjct 6248 TGTGCGATATGTATGTTCAAGGATTGACTTTGATCAATAAAAGCCCCGCGATCAGCAGCC 6189 Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 53038 |||| | || ||||||||| | ||||||||| | |||||||||| ||||||||| Sbjct 6188 ATTTGAAGGACCGTCTTTTGAGAAATTTCCCAGACTGTTTTATAAAGCTTCTTAATATCG 6129 Query 53039 TCTGGAAGGTTTG-----TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGA 53093 || |||| |||| |||| || | |||||| ||| | ||||| | | || | Sbjct 6128 TCAGGAA--TTTGAGGAATATTTTGTACGGATCCATTATCCGCAATAATATTTTGTTTCA 6071 Query 53094 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 53153 | || |||| ||| | | | || || || |||| | | ||| |||| || | || Sbjct 6070 TTTCGTCATCCCAAAGATCCATATCAGTCAAGTCTCTCAATAAATGTTGATTCACAATTT 6011 Query 53154 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACT 53213 ||||||| || || || || | | | ||||||||| || || | || | | Sbjct 6010 GAAATTCACCGGATAAGACGCGTCTGGAGTAAATATTTGATGTGTATGCCTCAATTCCTT 5951 Query 53214 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 53273 |||| || || | ||||| || || || || || ||||| || || | | | || Sbjct 5950 CATTGTTACCTAGTATTTGGGCCGTGGAGGCGGTTGGCATGGGAGCAAGAAGAAGGGAAT 5891 Query 53274 TTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACG 53333 | | | |||| | | ||||| | |||| | ||||| ||| | || | | Sbjct 5890 TCCGTACTCCGTCTTTAGCAATTTTTGCCTTTAATTTTGACCAATCCCACATATTTGTGG 5831 Query 53334 G---TACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACAT 53390 | ||| | |||||| | || | ||| | |||||| || Sbjct 5830 GGGTAACACCTTCCCAAAGATCAAATTGTAGCAACCCTTGACTTACTGGAGATCCTTTAT 5771 Query 53391 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 53450 |||| ||||||| ||| | ||||||||||||||||||| ||||| |||||||| | Sbjct 5770 ATGTCTCGTATGTTCCCAATTCAGCAGCTAGTTCACAACTCGCTTCTAAGGCACCGTAGT 5711 Query 53451 AAATGGTTTCGAAGATCTTCTTATTTA 53477 |||| ||||| || || | || |||| Sbjct 5710 AAATAGTTTCAAATATTTGTTTGTTTA 5684 Score = 87.8 bits (96), Expect = 2e-12 Identities = 170/251 (68%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 54761 ATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCG 54820 ||||||||| || | |||||||| |||||||| ||||| ||||| || || | ||| Sbjct 4194 ATCACTTCAGAGAAAACCTTTTTTGTCTCTTTGTGAAGATTGGATACAGCAATCCGAGCA 4135 Query 54821 GCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGA 54880 || || ||||| || || ||||| | || || || || || ||||| || | | | Sbjct 4134 GCAAGGATGGCGTAGTCTGGATGCTTCGTTGTCATCGTTGCCGCAATTTCCGCAGCTAAA 4075 Query 54881 GTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATT 54940 ||||||| || | || | ||| || ||| | ||| || ||||| | || || Sbjct 4074 TTGTCCAACTCAATAGTGGATACACCCGGATAGAGTCCCGAAATTACCTTAAGAGTAATG 4015 Query 54941 TTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTG 55000 | |||| | |||||| ||| | |||||||| | ||| | |||||||||| Sbjct 4014 GCCGTGGGATTCACATGATCCATGTCCAGCCCATAACAAAGCTTTTGTACACGAGATGTG 3955 Query 55001 ATTTTATCAAA 55011 || ||||| || Sbjct 3954 ATCTTATCGAA 3944 >seq27661 Length=34041 Score = 172 bits (190), Expect = 7e-38 Identities = 332/478 (69%), Gaps = 19/478 (4%) Strand=Plus/Minus Query 23824 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTT 23883 |||| |||||||| ||| ||||| ||||| || || |||||| |||||||| |||| Sbjct 22450 CTTG-GACATAACACCCGCCTTTTGATATTCCCCAACCTTTTTTTCAAAAAAATTGGTTT 22392 Query 23884 TACCTTCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTA--TAGATTCT 23941 |||| || | ||| ||||||||||| ||||| | ||||| | ||| || ||| | Sbjct 22391 TACCATCAAGTGAAATATTTTCCATAAAATCAAAGGGATTCTCAG--TTAGGTAAATTTT 22334 Query 23942 TTTAAATCCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCAT 24001 | | | || || | ||||||||| ||||| | |||||| | || ||| Sbjct 22333 CGGACAATTAAGCTCTACAAGAAGTCTATCTGCAACAAATTTAATATAT---TGCACCAT 22277 Query 24002 T---TCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTC 24058 ||||| |||||||| | | | ||| || || ||| |||| |||||||| ||| Sbjct 22276 GGAATCACAGTTCATTCCCAACATTCGAACGGGGAGTGCCTCAGTTAGAAATTCACTTTC 22217 Query 24059 AATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGG-TGGAT-ACAAT 24116 ||| | || || || ||||| || || | | | ||| ||| | | | Sbjct 22216 AATCGCAACAGCCTCACGAATAATT--TCG-ACAATACGAGC-CACGGATGGCTTATGAG 22161 Query 24117 AAA--TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTA 24174 || ||| ||||||| | ||| || ||||| || | |||||||||||| || | Sbjct 22160 CAAGGTGTCTAAACATAAGACAGGCAAAATCTGTATGCAATCCCTCGTCTCTAGATATAA 22101 Query 24175 ATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACG 24234 |||||| ||||| ||||| |||||||| || ||||| || || | ||| |||||||| | Sbjct 22100 GTTCGTTTGAAAAGGTGAGACCGGGCATGAGTCCACGTTTCTTTAACCAGAATATGGAAG 22041 Query 24235 CAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCC 24292 ||||||| || |||||||| || || || || || ||||||||||||| || ||||| Sbjct 22040 CAAATGACCCTGAAAAGAAGATGCCCTCGACGGCAGCAAAGGCAATAATTCGATCTCC 21983 Score = 143 bits (158), Expect = 3e-29 Identities = 215/305 (70%), Gaps = 3/305 (1%) Strand=Plus/Minus Query 24426 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 24485 |||||||| || |||||||| || || || |||||||| |||||||||||||| ||||| Sbjct 21775 TACATTTCGGAGTGAATGTTCTCGATTGCAATTTGAAACCCGTAGAAACATCTCGCCTCC 21716 Query 24486 GTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 24545 |||| ||||||||| ||||| || | | || || ||||| |||||||| Sbjct 21715 GTAACCTGTACTTCCTGTGTAAATCTCTCCACAATGTTCTCGTTCACAATTCCGTCCGAC 21656 Query 24546 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT---A 24602 || || ||||| ||||| || || |||||| || ||| || | | ||| Sbjct 21655 GCAGCGAAAAATGCCAAAACTCGTGATATAAAGTACCGTTCCTCATCATTCAATTTCTCC 21596 Query 24603 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 24662 | ||| || | | || || | |||||||| ||||| |||||||| ||| | Sbjct 21595 TCCCAGTCGATCAAGTCCTTGCTGAGGTCCACTTCCTCCACAGTCCAAAAGCTTGCTACG 21536 Query 24663 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTT 24722 ||||| |||||||| ||||| || ||| ||||| || |||| || || |||||||| Sbjct 21535 GCCTTCTTATACATGTTCCAAATATCAAAATATTCGATAGGAAGGATTACGAATCTATTA 21476 Query 24723 GGATT 24727 ||||| Sbjct 21475 GGATT 21471 >seq4608 Length=17199 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/229 (70%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 147859 GAAGGATTGGTCTTAAAAGATATTAATGGAGTATACGAGCCGGGAAAAAGAAGATGGTTA 147918 ||||||||||| | |||||||| ||| || |||||||| || || ||| | Sbjct 12424 GAAGGATTGGTACTCAAAGATATCAATTCTACTTATGAGCCGGGGAAGCGACATTGGCTT 12365 Query 147919 AAAATAAAGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAGTA 147978 || | || ||| |||||||| || || | ||||||||| |||| || || || || Sbjct 12364 AAGGTCAAAAAAGATTATTTGAATGATGGGGCAATGGCAGATACTGCTGACTTGGTTGTT 12305 Query 147979 CTAGGTGCTTACTATGGTAAAGGAGCAAAGGGTGGTATTATG-GCAGTCTTTCTAATGGG 148037 | |||| | | ||||| |||| ||||||||| || || ||| | ||| | ||||| Sbjct 12304 TTGGGTGGATGGTTTGGTACAGGACAAAAGGGTGGGATCGTGAGCA-TATTTTTGATGGG 12246 Query 148038 TTGTTACGATGATGAATCCGGTAAATGGAAGACGGTAACTAAATGTTCA 148086 ||| |||||| | || ||||||| ||| ||||| ||| ||||| Sbjct 12245 TTGCTACGATACCTCAACCAAAAAATGGATGACTGTAAC-AAAGGTTCA 12198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593104389289200