Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq42503 109 5e-19 seq66674 100 2e-16 seq62093 93.3 4e-14 seq65606 84.2 2e-11 seq65604 84.2 2e-11 >seq42503 Length=950 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || ||| | ||||| | || || |||||||| || ||| ||| || | Sbjct 639 AATGCAGATTTTCGTTAAAACCCTCACTGGAAAAACCATCACACTTGAAGTTGAAGCCTC 580 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | || | ||| |||||| ||||| ||||| | || |||||| Sbjct 579 AGACACCATTGAAAATGTCAAGGCTAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCA 520 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||||| | || ||||| ||||| ||| | |||||| | |||| | |||||||||| Sbjct 519 GCAAAGATTGATATTTGCTGGCAAGCAATTAGAAGATGGAAGAACTCTTTCCGATTACAA 460 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||| |||||||| || || |||||| |||| | |||| ||||||| Sbjct 459 TATCCAGAAGGAGTCAACCCTTCACTTGGTTCTCAGATTGAGAGGAGG 412 >seq66674 Length=28361 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || ||||||| | || || ||||| || || ||| ||| | | Sbjct 27876 AATGCAAATCTTTGTCAAAACCCTTACTGGTAAAACAATCACTCTTGAAGTCGAAGCTTC 27817 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || |||| |||||| || || |||||| | ||| |||||| Sbjct 27816 TGATACTATTGAAAATGTTAAAGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGATCA 27757 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||| | | |||||||| || |||||| |||||||| | ||| | | ||||| || Sbjct 27756 ACAACGTTTAATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACGCTTTCAGATTATAA 27697 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| ||||||||||||||||| | || ||| |||| |||| || Sbjct 27696 CATTCAAAAGGAATCTACTCTTCATTTAGTTTTAAGATTGAGAGGTGG 27649 >seq62093 Length=56387 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 || |||||||| ||| ||||||| ||||||||||| ||||||||| || ||||| Sbjct 3720 AAGATGCAAATCTTCGTCAAAACTTTGACGGGCAAGACCATTACCCTTGAGGTCGAACCT 3661 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 |||| || | | || | ||| || || ||||| ||||| | || |||| Sbjct 3660 TCAGATACCATCGAAAATGTGAAGACTAAGATCCAGGATAAGGAAGGAATTCCTCCAGAT 3601 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || ||| | || |||||||| ||||| || || |||||| | ||| || | ||||| Sbjct 3600 CAGCAACGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGAAGGACTTTGTCTGATTAT 3541 Query 29139 AATATTCAGAA 29149 || |||||||| Sbjct 3540 AACATTCAGAA 3530 >seq65606 Length=3149 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||| |||| || ||||||| ||||||||||| ||||| || || | ||||| || Sbjct 2504 ATGGAAATCTTTGTCAAAACTTTGACGGGCAAGACCATCTCCCTTGAGGCCGAACCTTCA 2445 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCC--GATAAAGAAGGTGTGCCCGTAGATC 29079 || || | | || | || || || || ||||| ||||| | || ||||| Sbjct 2444 GATACCATCGAAAATGTGAA--AACTAAGCTCCAAGATAAGGAAGGAATTCCTCCAGATC 2387 Query 29080 AACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACA 29139 | ||| | | |||||||| ||| | || || |||||| | ||| || ||||||| | Sbjct 2386 AGCAATGTCGCATCTTTGCTGGCCAGCAGCTTGAAGATGGAAGGACTTTGTCCGATTATA 2327 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| |||| | ||| ||||||||| || | ||||| |||| || Sbjct 2326 ATATTTAGAAACAGTCTGGTCTTCACATCGTCCTTCGATTCAGAGGGGG 2278 >seq65604 Length=3149 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||| |||| || ||||||| ||||||||||| ||||| || || | ||||| || Sbjct 646 ATGGAAATCTTTGTCAAAACTTTGACGGGCAAGACCATCTCCCTTGAGGCCGAACCTTCA 705 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCC--GATAAAGAAGGTGTGCCCGTAGATC 29079 || || | | || | || || || || ||||| ||||| | || ||||| Sbjct 706 GATACCATCGAAAATGTGAA--AACTAAGCTCCAAGATAAGGAAGGAATTCCTCCAGATC 763 Query 29080 AACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACA 29139 | ||| | | |||||||| ||| | || || |||||| | ||| || ||||||| | Sbjct 764 AGCAATGTCGCATCTTTGCTGGCCAGCAGCTTGAAGATGGAAGGACTTTGTCCGATTATA 823 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| |||| | ||| ||||||||| || | ||||| |||| || Sbjct 824 ATATTTAGAAACAGTCTGGTCTTCACATCGTCCTTCGATTCAGAGGGGG 872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427901850008075