Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq42503 114 1e-20 seq20317 109 5e-19 seq66674 105 5e-18 seq62093 86.0 5e-12 >seq42503 Length=950 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || ||| | ||||| | || || |||||||| || ||| ||| || | Sbjct 639 AATGCAGATTTTCGTTAAAACCCTCACTGGAAAAACCATCACACTTGAAGTTGAAGCCTC 580 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | || ||||| |||||| ||||| ||||| | || |||||| Sbjct 579 AGACACCATTGAAAATGTCAAGGCTAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCA 520 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||||| | || ||||| ||||| ||||| |||||| | |||| | |||||||||| Sbjct 519 GCAAAGATTGATATTTGCTGGCAAGCAATTAGAAGATGGAAGAACTCTTTCCGATTACAA 460 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||| || ||||| || || |||||| |||| | |||| ||||||| Sbjct 459 TATCCAGAAGGAGTCAACCCTTCACTTGGTTCTCAGATTGAGAGGAGG 412 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| |||||| | ||| |||||||||| | | |||||||| || |||||||||||| Sbjct 773 GATAAGGAAGGTATTCCCCCAGATCAACAACGTTTAATCTTTGCTGGTAAACAATTGGAA 714 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | ||| | | ||||| ||||||||||||||||| |||||||| | || || Sbjct 713 GATGGAAGAACNCTTTCAGATTATAATATTCAAAAGGAATCCACTCTTCATTTAGTATTG 654 Query 25248 CGATTACGAGGAGG 25261 |||| ||||||| Sbjct 653 AGATTGAGAGGAGG 640 >seq20317 Length=5186 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || || ||||||| ||||| || || |||||||| ||| |||||| | Sbjct 672 AATGCAGATCTTTGTCAAAACTTTGACTGGAAAGACCATTACGCTCGAGGTTGAACCCTC 613 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | | | ||| || ||| ||||| ||||| | ||| |||||| Sbjct 612 AGATACCATTGAAAACGTTAAGGCCAAGATTCAAGATAAGGAAGGAATTCCCCCAGATCA 553 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || ||||| |||||||| || || || ||||||||| ||| || | || ||||| Sbjct 552 GCAGAGACTGATCTTTGCTGGAAAGCAGTTGGAAGATGGACGTACTTTGTCAGACTACAA 493 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||||||||| || ||||| | || ||| |||| ||||||| Sbjct 492 CATCCAAAAGGAATCCACCCTTCATTTAGTATTAAGATTGAGAGGAGG 445 Score = 104 bits (114), Expect = 2e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| |||||| | ||| |||||||||| | | |||||||| || |||||||||||| Sbjct 122 GATAAGGAAGGTATTCCCCCAGATCAACAACGTTTAATCTTTGCTGGTAAACAATTGGAA 63 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 ||| | |||| | | ||||| ||||||||||||||||| |||||||| Sbjct 62 GATGGAAGAACTCTTTCAGATTATAATATTCAAAAGGAATCCACTCTTCA 13 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | ||||| | ||||| |||||||| || ||| |||| | || Sbjct 899 ATGCAAATCTTTGTGAAAACTCTCACGGGTAAAACCATCACACTTGAAGTGGAAGCTTCA 840 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | || ||||| || || ||||| ||||| | ||| |||||| Sbjct 839 GACACGATTGAAAATGTCAAGACCAAGATCCAGGATAAGGAAGGAATCCCCCCAGATCAG 780 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | |||||||| || || |||||||| ||| || || |||| ||||| Sbjct 779 CAACGTTTGATCTTTGCTGGAAAGCAATTGGAGGATGGACGTACATTGTCCGACTACAAC 720 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||||||| ||||| ||| | || | | || ||||||| Sbjct 719 ATTCAAAAGGAATCCACTCTCCACTTAGTCCTGAGGTTGAGAGGAGG 673 >seq66674 Length=28361 Score = 105 bits (116), Expect = 5e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| || || |||||| | ||| |||||||||| | | |||||||| || ||| Sbjct 27791 AAAATTCAAGACAAGGAAGGTATTCCCCCAGATCAACAACGTTTAATCTTTGCTGGTAAA 27732 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 |||||||||||| | ||| | | ||||| || ||||||||||||||||||||||| Sbjct 27731 CAATTGGAAGATGGAAGAACGCTTTCAGATTATAACATTCAAAAGGAATCTACTCTTCAT 27672 Query 25239 ATGGTGTTACGATTACGAGGAGG 25261 | || ||| |||| |||| || Sbjct 27671 TTAGTTTTAAGATTGAGAGGTGG 27649 Score = 102 bits (112), Expect = 7e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| |||||| | ||| |||||||||| | | |||||||| || |||||||||||| Sbjct 28010 GATAAGGAAGGTATTCCCCCAGATCAACAACGTTTAATCTTTGCTGGTAAACAATTGGAA 27951 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | ||| | | ||||| ||||||||||||||||| |||||||| | || || Sbjct 27950 GATGGAAGAACCCTTTCAGATTATAATATTCAAAAGGAATCCACTCTTCATTTAGTATTG 27891 Query 25248 CGATTACGAGGAGG 25261 |||| |||| || Sbjct 27890 AGATTGAGAGGTGG 27877 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | |||||| | || || ||||| || || ||| || ||| | Sbjct 27419 ATGCAGATTTTCGTTAAAACACTCACTGGTAAAACAATCACTCTTGAAGTTGAGCCCTCT 27360 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || |||||| || || || || | || |||||| Sbjct 27359 GATACCATTGAGAATGTTAAAGCCAAAATTCAAGACAAGGAGGGCATTCCTCCAGATCAG 27300 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | |||||||| || ||||||||||||||| ||| | ||||||| || Sbjct 27299 CAACGTTTGATCTTTGCTGGTAAACAATTGGAAGATGGACGCACTTTATCCGATTATAAC 27240 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 |||||||| |||||||| |||||| |||| || || Sbjct 27239 ATTCAAAAAGAATCTACCCTTCACTTGGTTTTGCG 27205 >seq62093 Length=56387 Score = 86.0 bits (94), Expect = 5e-12 Identities = 136/194 (70%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 || |||||||| ||| ||||||| ||||||||||| ||||||||| || ||||| Sbjct 3720 AAGATGCAAATCTTCGTCAAAACTTTGACGGGCAAGACCATTACCCTTGAGGTCGAACCT 3661 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 |||| || | | || | ||| || || ||||| ||||| | || |||| Sbjct 3660 TCAGATACCATCGAAAATGTGAAGACTAAGATCCAGGATAAGGAAGGAATTCCTCCAGAT 3601 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 || ||| | || |||||||| ||||| || | |||||| | ||| || | ||||| Sbjct 3600 CAGCAACGTCTCATCTTTGCTGGCAAGCAGCTCGAAGATGGAAGGACTTTGTCTGATTAT 3541 Query 25212 AATATTCA-AAAGG 25224 || ||||| ||||| Sbjct 3540 AACATTCAGAAAGG 3527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410380427275310