Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq27661 118 1e-21 seq20317 102 8e-17 seq42503 98.7 1e-15 seq66674 89.7 5e-13 >seq27661 Length=34041 Score = 118 bits (130), Expect = 1e-21 Identities = 134/178 (75%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 117023 GCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGC 117082 ||| ||||||| || || | | ||||| || |||||||||||| |||||||||| || Sbjct 21974 GCCTCCTTCGGAGATCGAATTATTGCCTTTGCTGCCGTCGAGGGCATCTTCTTTTCAGGG 22033 Query 117083 AGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGAC--TTTCA 117140 || || ||||||| ||| | |||||||| || ||||||||||| || || ||||| Sbjct 22034 TCATTTGCTTCCATATTCTGGTTAAAGAAACGTGGACTCATGCCCGGTCTCACCTTTTCA 22093 Query 117141 GCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTT 117198 ||||| || || || || |||||||| ||||| || ||||||||| | |||| Sbjct 22094 --AACGAACTTATATCTAGAGACGAGGGATTGCATACAGATTTTGCCTGTCTTATGTT 22149 >seq20317 Length=5186 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| |||||||| ||||||||||| | || || ||||| | Sbjct 899 ATGCAAATCTTTGTGAAAACTCTCACGGGTAAAACCATCACACTTGAAGTGGAAGCTTCA 840 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || ||| | ||||| || || | || || || || |||||| | || || Sbjct 839 GACACGATTGAAAATG-TCAAGACCAAGATCCAGGATAAGGAAGGAATCCCCCCAGATCA 781 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| || || || || |||| || | || || | ||||||||| Sbjct 780 GCAACGTTTGATCTTTGCTGGAAAGCAATTGGAGGATGGACGTACATTGTCCGACTACAA 721 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| || ||||| |||| || || |||| || | ||||| || || Sbjct 720 CATTCAAAAGGAATCCACTCTCCACTTAGTCCTGAGGTTGAGAGGAGG 673 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || ||||| | || || || ||||| || |||| || ||| || | Sbjct 672 AATGCAGATCTTTGTCAAAACTTTGACTGGAAAGACCATTACGCTCGAGGTTGAACCCTC 613 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | | | ||||| | |||| || |||| || || || || || ||| | || | Sbjct 612 AGATACCATTGAAAACGTT-AAGGCCAAGATTCAAGATAAGGAAGGAATTCCCCCAGATC 554 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| |||| |||| || || || ||| |||| || | || || | ||||||| Sbjct 553 AGCAGAGACTGATCTTTGCTGGAAAGCAGTTGGAAGATGGACGTACTTTGTCAGACTACA 494 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||| ||||| |||| || ||| |||| || | ||||| || || Sbjct 493 ACATCCAAAAGGAATCCACCCTTCATTTAGTATTAAGATTGAGAGGAGG 445 >seq42503 Length=950 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| ||||| ||||| || ||||||||||| | || || |||||| | Sbjct 639 AATGCAGATTTTCGTTAAAACCCTCACTGGAAAAACCATCACACTTGAAGTTGAAGCCTC 580 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||| |||||| ||||||| || || || || || || | || || Sbjct 579 AGACACCATTGAAAATGTCAAGGCTAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCA 520 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| || | || | || ||||| || | || || | | || || ||| ||||| Sbjct 519 GCAAAGATTGATATTTGCTGGCAAGCAATTAGAAGATGGAAGAACTCTTTCCGATTACAA 460 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| | || || || Sbjct 459 TATCCAGAAGGAGTCAACCCTTCA 436 >seq66674 Length=28361 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || ||||| || || || ||||||||||| | || || ||||| | Sbjct 28332 AATGCAGATTTTTGTTAAAACTCTGACTGGAAAAACCATCACACTTGAAGTGGAAGCTTC 28273 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | ||| |||||| ||||||| || || || || || ||| | ||||| Sbjct 28272 AGACACAATTGAAAATGTCAAGGCTAAAATTCAAGATAAGGAAGGTATTCCCCCAGACCA 28213 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTAC 40866 ||||| | |||| || || ||||| | || || | || ||| ||| || || Sbjct 28212 ACAACGTTTGATCTTTGCTGGTAAACAATTAGAGGATGGAAGAACACTTTCA--GATTAT 28155 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||| |||||| |||| || || || || Sbjct 28154 AACATCCAAAAGGAGTCCACCCTTCACCTGGT 28123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514683597440400