Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq46208 214 1e-50 >seq46208 Length=8390 Score = 214 bits (236), Expect = 1e-50 Identities = 407/589 (69%), Gaps = 14/589 (2%) Strand=Plus/Plus Query 97048 GCATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGA 97107 |||||||||||||| || | ||| ||||| ||||| || ||||| ||||| ||||| Sbjct 5530 GCATCAATGTGATTGTTGTATACGTGTGCATCACCTAAGGTATGAATGAATTCACCAGGT 5589 Query 97108 ACTAAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAA 97167 | || || |||||||| | |||| ||||| |||||||| || || ||||||||| Sbjct 5590 TTGAGATTGGTCACATGGGCCAACATAATCGTTAAGAGAGAATAACTTGCTATGTTAAAA 5649 Query 97168 GGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCA 97227 || || |||| ||||||||| || |||| ||||||||| ||||| || || | |||| Sbjct 5650 GGTACTCCTAATCCCATATCTGCAGATCGTTGATATAATTGACAAGATAGTTCACCATTG 5709 Query 97228 CACACATAAAACTGACTCAATACA-TGACAGGGGGGCAACGCCATTTTTGGAACATCTAA 97286 |||||||| ||| ||| ||| ||||| ||||| | ||||| |||| |||| Sbjct 5710 GCAACATAAAATTGAGCCAA-ACAGTGACAAGGGGGAAGAGCCATCAGGGGAATATCTTT 5768 Query 97287 GACATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAAT 97346 |||||| || ||||| || || | | |||| ||||||| | ||| || || || Sbjct 5769 AGGATTCCAGGCGCACATTAATATACGACGATCGTTTGGGTTATCTTTTATAGTCTTGAT 5828 Query 97347 TATCTGCTTTAATTGATCAACGCCTTCTCCACCATA---ATTGTGCTTAAGACCTTGATA 97403 | || | || ||||| |||| || || | ||||| || | ||| || Sbjct 5829 AACATGAGAAAGCTGGTCAACTCCTTTCCCTTGGTAGTCAGTGTGCATATTA--TTG-TA 5885 Query 97404 TTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCT 97463 ||| |||||| |||| | ||||||||||||||| || || || || ||||| |||||||| Sbjct 5886 TTCCGCTCCATAATGACGCCATTGGAATCCATATACTGGACCGAGATCTCCCTCTTCTCT 5945 Query 97464 ATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCAC 97523 | || || | ||||||| | ||| || ||| |||||| || | | | Sbjct 5946 GTTGGTAAATCCCATAGAATCTAAAAATTCCCTTGAGGAGTTTCCATCCC--ATATCCTC 6003 Query 97524 ACCAGATGCTGC--AAGCTC-TTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTC 97580 ||| | | | |||||| ||||| | || ||||||| |||||||| || ||||| Sbjct 6004 ACCTTTTTTTCCTTAAGCTCATTTGC-ATTTGTTGATCCTCGAATAAACCAAAATAATTC 6062 Query 97581 TTCCACAACACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAAA 97629 ||| | | ||||| ||| || | || || |||| | |||||| Sbjct 6063 TTCTGCGATTCCTCTTATAAAAACAGTTTTGGTAGTTAGTAATGGAAAA 6111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346432508949050