Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq66674 141 8e-29 seq12343 100 2e-16 seq17180 98.7 9e-16 seq20317 96.9 3e-15 seq27661 95.1 1e-14 seq42503 86.0 5e-12 >seq66674 Length=28361 Score = 141 bits (156), Expect = 8e-29 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| |||||||| | ||||| |||||||||||||| |||||| | |||||| ||| Sbjct 27207 CAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGATAAAGTGCGTCCATC 27266 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | ||||| ||||| |||| | ||| |||||||| ||||| |||||||||||||| Sbjct 27267 TTCCAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCCTCCTTGTC 27326 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | |||||| |||||| | || | ||| || | | ||| || || | || | || Sbjct 27327 TTGAATTTTGGCTTTAACATTCTCAATGGTATCAGAGGGCTCAACTTCAAGAGTGATTGT 27386 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || || ||||| || ||||||||||| Sbjct 27387 TTTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27419 Score = 105 bits (116), Expect = 6e-18 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| | |||||| | |||| ||| | || ||||| ||||| ||||| ||||| | Sbjct 28105 CCTCCTCTTAATCTGAGGACCAGGTGAAGGGTGGACTCCTTTTGGATGTTATAATC--TG 28162 Query 118572 ATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||| | | |||||| | ||||| ||||| |||| | ||| || || || || | Sbjct 28163 AAAGTGTTCTTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGG 28222 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGT-GCTCTCG 118688 | || || ||||| ||| |||||| || || | ||| | ||||| | ||| || Sbjct 28223 GAATACCTTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATTGTGTCTGAAGCT-TCC 28281 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||| || ||||||||||| |||||||||||||| Sbjct 28282 ACTTCAAGTGTGATGGTTTTTCCAGTCAGAGTTTTAACAAAAATCTGCAT 28331 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || | | ||| || || || || | || ||||||||||||||||| || || Sbjct 27419 TACCACCTCTAAGTCTTAAAACTAAATGCAACGTGGACTCTTTTTGAATGTTATAGTCTG 27478 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || |||||| | ||||| ||||| |||| | ||| |||||||| |||| Sbjct 27479 ATAAAGTACGTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAG 27538 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || |||||| |||||| ||||| | ||| | || || | ||| || Sbjct 27539 GAATACCTTCTTTGTCTTGAATTTTAGCCTTAACATTTTCTATAGTATCAGAAGCT-TCA 27597 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||| || || || ||||| || ||||||||||| Sbjct 27598 ACTTCAAGAGTGATTGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27647 Score = 93.3 bits (102), Expect = 4e-14 Identities = 156/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 118521 AATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGC 118580 ||||| || || || || | ||||| || ||||||||||| |||| || | || | | Sbjct 27658 AATCTTAAAACTAAATGAAGAGTAGATTCCTTTTGAATGTTATAAT--CTGAAAGCGTTC 27715 Query 118581 GT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCT 118638 | ||| || | ||||| ||||| |||| | ||| || ||||| || || || || | Sbjct 27716 TTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTT 27775 Query 118639 CCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACG 118697 |||||||| |||||| |||||| | ||| | || || | ||| ||||| || | Sbjct 27776 CCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGCT-TCGACTTCAAGA 27834 Query 118698 GTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||||| || || || ||||| ||||| || ||||| Sbjct 27835 GTGATTGTTTTACCAGTAAGGGTTTTGACAAAGATTTGCAT 27875 >seq12343 Length=6788 Score = 100 bits (110), Expect = 2e-16 Identities = 150/212 (71%), Gaps = 11/212 (5%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || || ||||||| ||||||||| || | ||| || |||||| Sbjct 2174 ACCAAATGAAGAGTGGATTCTTTTTTAATGTTGTAGTCCAAAAGAGTACGACCATCCTCT 2233 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCG---GGAGGTATGCCCTCCTTGTCT 118646 | ||||||||| | |||| | ||| |||||||| |||||||| |||||||| || Sbjct 2234 AATTGTTTTCCAACAAAGATCAAACGTTGCTGATCTAGAGGAGGTATTCCCTCCTTATCC 2293 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 | |||||| |||||| | ||||| | || ||| ||||| | ||| | ||| Sbjct 2294 TTGATTTTTGTTTTAACATTTTCGATAG-------GC-CTCAACCTCAAGGGTAATAGTT 2345 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || || ||||| ||||||||||| Sbjct 2346 TTACCCGCAAGGGTCTTTACGAAAATCTGCAT 2377 >seq17180 Length=12851 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||||||||||||||| || | || || |||||| | || ||||| || ||| Sbjct 4121 CTTTTTGAATGTTGTAGTCCGAAAGGGTACGGCCATCCTCTAATTGCTTTCCCGCAAAGA 4062 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC-TGTAATTTTTTGT-TTAACCTG 118666 | | ||| |||||||| ||||| || |||||||| || || | |||| || ||||| | Sbjct 4061 TCAAACGTTGCTGATCTGGAGGAATTCCCTCCTTATCCTGGA--TTTTGGTCTTAACATT 4004 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 ||||| || || | | ||| ||||| | ||| | ||||| || || || || || || Sbjct 4003 TTCGATAGTATCTGAGGCCTCAACCTCAAGGGTAATAGTTTTACCCGTGAGGGTCTTCAC 3944 Query 118727 AAAAATCTGCAT 118738 ||||||||||| Sbjct 3943 GAAAATCTGCAT 3932 >seq20317 Length=5186 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| | || |||| || ||||||| || || || |||||||||||||| ||| | Sbjct 673 CCTCCTCTCAACCTCAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAC 732 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || |||||| | || |||||||| |||| | ||| |||||||| || || Sbjct 733 AATGTACGTCCATCCTCCAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGGG 792 Query 118632 ATGCCCTCCTTGT-CTGTAATTTTTTGT-TTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 || || ||||| | ||| | | || || || || | ||| | ||||| | ||| || Sbjct 793 ATTCCTTCCTTATCCTGGA--TCTTGGTCTTGACATTTTCAATCGTGTCTGAAGCT-TCC 849 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||| || || |||||||| ||||| || ||||| Sbjct 850 ACTTCAAGTGTGATGGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCAT 899 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| | ||||| | ||||| || | || ||||| ||||||||||| || || Sbjct 217 CCTCCTCTCAATCTAAGGACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAGTCTGAT 276 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || ||| || | ||||| ||||| | || | | ||||||||| ||||| Sbjct 277 AAAGTACGTCCATCTTCTAATTGTTTRCCAGCAAAAATCAATCTCTGCTGATCTGGAGGA 336 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 || || ||||| ||| ||||| || || | ||| | ||||| | ||| || || Sbjct 337 ATTCCTTCCTTATCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCTGAAGCT-TCCAC 395 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | ||||| || || |||||||| |||||||||||||| Sbjct 396 TTCAAGAGTGATTGTTTTTCCAGTGAGAGTTTTAACAAAAATCTGCAT 443 >seq27661 Length=34041 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/228 (71%), Gaps = 8/228 (4%) Strand=Plus/Plus Query 45074 GAAGCCGTGGCCATCGAGATGGAATTTTTTGCTGAGGCTCTGCCCGAATCGT-TGGTGGG 45132 || || || || || || | |||||| | ||||||| || |||| ||| || |||| Sbjct 22202 GAGGCTGTTGCGATTGAAAGTGAATTTCTAACTGAGGCACTCCCCGT-TCGAATGTTGGG 22260 Query 45133 AATGAAC-GCGAAT--ATGATGAGAAAGTACATTGAGTTTGTCGCCGATCGTCTTCTCGT 45189 ||||||| | || | ||| || | || ||| | ||||| || ||| | ||||| || Sbjct 22261 AATGAACTGTGATTCCATGGTG---CAATATATTAAATTTGTTGCAGATAGACTTCTTGT 22317 Query 45190 CCAGTTAAAGTATCCCAAGATGTACTATACTGAGAACCCATTCGAGTTTATGAACAATAT 45249 || | || | ||| || || ||| |||||||| || || || |||||| | ||||| Sbjct 22318 AGAGCTTAATTGTCCGAAAATTTACCTAACTGAGAATCCCTTTGATTTTATGGAAAATAT 22377 Query 45250 TTCGTTGGAGGGCAAAACTAAtttttttGAGAAACGCGTCGGCGAATA 45297 ||| | || || ||||| ||||||||||| ||| || || ||||| Sbjct 22378 TTCACTTGATGGTAAAACCAATTTTTTTGAAAAAAAGGTTGGGGAATA 22425 >seq42503 Length=950 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| | ||||| | |||||||| | || ||||| || || || ||||||||| Sbjct 412 CCTCCTCTCAATCTGAGAACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCGGAA 471 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| | ||| || | || || ||||| | || | | |||||||| ||||| Sbjct 472 AGAGTTCTTCCATCTTCTAATTGCTTGCCAGCAAATATCAATCTTTGCTGATCTGGAGGA 531 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || ||||| ||| |||||| || || | ||| | |||||| | | || || Sbjct 532 ATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATGGTGTCTGAGGCTTCAACT 591 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | ||||| || || || ||||| || ||||||||||| Sbjct 592 TCAAGTGTGATGGTTTTTCCAGTGAGGGTTTTAACGAAAATCTGCAT 638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433390681030180