Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq66674 154 2e-32 seq42503 149 9e-31 seq20317 140 5e-28 seq12343 87.8 3e-12 seq17180 86.0 9e-12 >seq66674 Length=28361 Score = 154 bits (170), Expect = 2e-32 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||||||||||||| || ||||| || || || ||||| || ||||| ||||| Sbjct 27421 CCACCTCTAAGTCTTAAAACTAAATGCAACGTGGACTCTTTTTGAATGTTATAGTCTGAT 27480 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| ||||||||||| |||||||| ||||| | ||||||||| |||||| Sbjct 27481 AAAGTACGTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGA 27540 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||| ||||| |||||| ||| ||| ||| Sbjct 27541 ATACCTTCTTTGTCTTGAATTTTAGCCTTAACATTTTCTATAGTATCAGAAGCTTCAACT 27600 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 || || |||||||||||||| || | |||||||| ||| || |||||| Sbjct 27601 TCAAGAGTGATTGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCATT 27648 Score = 152 bits (168), Expect = 8e-32 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 |||||||||| | ||| ||||| ||||| | ||| ||||| ||| || |||||||||||| Sbjct 27875 TTCCACCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGA-ATATTATAATCT 27933 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 ||||| ||||| | ||| || |||||||| |||||||| || || | ||| ||||| || Sbjct 27934 GAAAGGGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGG 27993 Query 146168 GGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCT 146227 ||||| ||||| |||||||| || |||||| ||| Sbjct 27994 GGAATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCG 28053 Query 146228 ACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 ||||| || |||||||||||||| ||||| || |||| || ||||||||| Sbjct 28054 ACTTCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCATT 28104 Score = 143 bits (158), Expect = 4e-29 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 |||||||||| | |||||| || ||||| | ||||||||| ||| || || ||||||||| Sbjct 27647 TTCCACCTCTCAATCTTAAAACTAAATGAAGAGTAGATTCCTTTTGA-ATGTTATAATCT 27705 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 ||||| ||||| | ||| || |||||||| |||||||| || || | ||| ||||| || Sbjct 27706 GAAAGCGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGG 27765 Query 146168 GGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCT 146227 ||||| ||||| || ||||| |||||| ||| ||| Sbjct 27766 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGCTTCG 27825 Query 146228 ACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 ||||| || |||||||||||||| || | ||||| | || ||||||||| Sbjct 27826 ACTTCAAGAGTGATTGTTTTACCAGTAAGGGTTTTGACAAAGATTTGCATT 27876 Score = 111 bits (122), Expect = 2e-19 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| | || ||||| || | ||||||||||| || |||||||| | Sbjct 27191 TTCCACCACGAAGGCGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGG 27250 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | ||| | | ||| || |||||||| |||||||| ||||| | ||||||||| |||| Sbjct 27251 ATAAAGTGCGTCCATCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAG 27310 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| || || || ||||| ||||| || || | Sbjct 27311 GAATGCCCTCCTTGTCTTGAATTTTGGCTTTAACATTCTCAATGGTATCAGAGGGCTCAA 27370 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| || |||||||||||||| || | |||||||| ||| || ||||| Sbjct 27371 CTTCAAGAGTGATTGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27419 Score = 107 bits (118), Expect = 3e-18 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| | ||| | |||| || | || || || || || |||||||||| Sbjct 28103 TTCCTCCTCTTAATCTGAGGACCAGGTGAAGGGTGGACTCCTTTTGGATGTTATAATCTG 28162 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||| ||||| | ||| ||||||||||| |||||||| ||||| | ||| || || || | Sbjct 28163 AAAGTGTTCTTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGG 28222 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| ||||| |||||||| || |||||| ||| | Sbjct 28223 GAATACCTTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATTGTGTCTGAAGCTTCCA 28282 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| |||||||| ||||| || || | ||||||| || || |||||| Sbjct 28283 CTTCAAGTGTGATGGTTTTTCCAGTCAGAGTTTTAACAAAAATCTGCATT 28332 >seq42503 Length=950 Score = 149 bits (164), Expect = 9e-31 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 |||| ||||| | ||| ||||| ||||| | ||| ||||| ||| || |||||||||||| Sbjct 638 TTCCTCCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGA-ATATTATAATCT 696 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 ||||| ||||| | ||| || |||||||| |||||||| || || | ||| ||||| || Sbjct 697 GAAAGNGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGG 756 Query 146168 GGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCT 146227 ||||| ||||| |||||||| || |||||| ||| Sbjct 757 GGAATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCG 816 Query 146228 ACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 ||||| || |||||||||||||| ||||| || |||| || ||||||||| Sbjct 817 ACTTCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCATT 867 Score = 134 bits (148), Expect = 2e-26 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| | ||| | ||||| || | || || || || ||||| ||||| | Sbjct 410 TTCCTCCTCTCAATCTGAGAACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCGG 469 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||||||||| | ||| |||||||| || |||||||| ||||||||||||||||| |||| Sbjct 470 AAAGAGTTCTTCCATCTTCTAATTGCTTGCCAGCAAATATCAATCTTTGCTGATCTGGAG 529 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||||||||| |||||||| || ||||| ||| | Sbjct 530 GAATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATGGTGTCTGAGGCTTCAA 589 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| |||||||| ||||| || || | ||||||| ||| || |||||| Sbjct 590 CTTCAAGTGTGATGGTTTTTCCAGTGAGGGTTTTAACGAAAATCTGCATT 639 Score = 118 bits (130), Expect = 2e-21 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || ||||| ||||| | ||| | | ||| ||||||||||| ||||||||||||||||| Sbjct 1 ATGTTATAGTCTGATAAAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATCAATCTC 60 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 |||||||| |||||||||||||| |||||||| |||| Sbjct 61 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGGATTTTAGCCTTGACATTCTCAATAGTA 120 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 || ||| ||| ||||| || ||||| |||||||| ||||| || || | || || ||| Sbjct 121 TCAGAAGCTTCGACTTCAAGAGTGATAGTTTTACCAGTTAAGGTCTTGACAAAAATYTGC 180 Query 146276 AT 146277 || Sbjct 181 AT 182 Score = 114 bits (126), Expect = 2e-20 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 | || ||||| | ||| | || || || | || || || || || |||||||||| Sbjct 182 TYCCTCCTCTCAATCTGAGGACTAAGTGAAGGGTGGACTCCTTTTGGATGTTATAATCTG 241 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||| ||||| | ||| ||||||||||| |||||||| ||||| | ||| || || || | Sbjct 242 AAAGTGTTCTTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGG 301 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| ||||| |||||||| |||||| ||| ||| | Sbjct 302 GAATACCTTCCTTATCTTGAATTTTAGCCTTAACATTCTCAATAGTATCAGAAGCTTCGA 361 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| || ||||| |||||||| ||||| || || | || ||||||||| Sbjct 362 CTTCAAGAGTGATAGTTTTACCAGTTAAGGTCTTGACAAAAATTTGCATT 411 >seq20317 Length=5186 Score = 140 bits (154), Expect = 5e-28 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 146063 CTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCT 146121 || ||||| ||||| | ||| ||||| ||| || ||||||||||||||||||||||| | Sbjct 1 CTCAATACTAAATGAAGAGTGGATTCCTTTTGA-ATATTATAATCTGAAAGAGTTCTTCC 59 Query 146122 ATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTT 146181 ||| || |||||||| |||||||| || || | ||| ||||| || ||||| ||||| || Sbjct 60 ATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTT 119 Query 146182 ATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGAT 146241 |||||| || |||||| ||| ||||| || ||||| Sbjct 120 ATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACTTCAAGAGTGAT 179 Query 146242 TGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 ||||||||| ||||| || |||| || ||||||||| Sbjct 180 TGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCATT 216 Score = 134 bits (148), Expect = 2e-26 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 |||| ||||| | ||| | |||||||| | || || || ||| || || ||||| ||| Sbjct 215 TTCCTCCTCTCAATCTAAGGACCAAATGAAGGGTCGACTCCTTTTGA-ATGTTATAGTCT 273 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 || | ||| | | ||| ||||||||||| ||||||||||||||||| |||||||| ||| Sbjct 274 GATAAAGTACGTCCATCTTCTAATTGTTTRCCAGCAAAAATCAATCTCTGCTGATCTGGA 333 Query 146168 GGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCT 146227 ||||||||||| |||||||| ||| |||||| ||| Sbjct 334 GGAATTCCTTCCTTATCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCTGAAGCTTCC 393 Query 146228 ACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 ||||| || ||||||||||| || || | ||||||| || || |||||| Sbjct 394 ACTTCAAGAGTGATTGTTTTTCCAGTGAGAGTTTTAACAAAAATCTGCATT 444 Score = 107 bits (118), Expect = 3e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| | ||||||||| ||||| | || ||||| || || || || |||| Sbjct 443 TTCCTCCTCTCAATCTTAATACTAAATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCTG 502 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | ||| | | ||| || || || ||||||||||| |||| ||| |||||||| || | Sbjct 503 ACAAAGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCTGGGG 562 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||| |||||||| Sbjct 563 GAATTCCTTCCTTATCTTG 581 >seq12343 Length=6788 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/137 (74%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| || | | |||||||| | ||| |||||||| || || || || || Sbjct 2156 CCACCTCGGAGACAGAGAACCAAATGAAGAGTGGATTCTTTTTTAATGTTGTAGTCCAAA 2215 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATC---CGGA 146167 ||||| | | ||| ||||||||||||||| |||| ||||| | ||||||||| ||| Sbjct 2216 AGAGTACGACCATCCTCTAATTGTTTTCCAACAAAGATCAAACGTTGCTGATCTAGAGGA 2275 Query 146168 GGAATTCCTTCTTTATC 146184 || ||||| || ||||| Sbjct 2276 GGTATTCCCTCCTTATC 2292 >seq17180 Length=12851 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || || || || ||||| || | || ||| |||||||| ||||| ||||| ||||| | | Sbjct 4113 ATGTTGTAGTCCGAAAGGGTACGGCCATCCTCTAATTGCTTTCCCGCAAAGATCAAACGT 4054 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| ||||||||||| || ||||| || Sbjct 4053 TGCTGATCTGGAGGAATTCCCTCCTTATCCTG 4022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742753457836800