Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq27661 219 4e-52 >seq27661 Length=34041 Score = 219 bits (242), Expect = 4e-52 Identities = 339/477 (71%), Gaps = 18/477 (4%) Strand=Plus/Minus Query 15926 TTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTT 15985 || |||||||| | ||||||||||| | ||| | |||||||| ||||| ||||| Sbjct 22449 TTGGACATAACACCCGCCTTTTGATATTCCCCAACCTTTTTTTCAAAAAAATTGGTTTTA 22390 Query 15986 CCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCG 16045 || || | |||||||||||||||||||||||| ||||| | | || |||| ||| Sbjct 22389 CCATCAAGTGAAATATTTTCCATAAAATCAAAGGGATTCTCAGTTAGGTAA-ATTT-TCG 22332 Query 16046 CATCCCAATTC----CAACAATAA-TCTATCCGCCACAAATTCTATATACTGTTTCATTA 16100 | ||||| | |||| || |||||| || ||||||| ||||| || ||| Sbjct 22331 GA---CAATTAAGCTCTACAAGAAGTCTATCTGCAACAAATTTAATATATTGCACCATGG 22275 Query 16101 AATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTA 16160 |||||||||||||||| | | | ||| |||| ||| || |||| ||| | |||| | Sbjct 22274 AATCACAGTTCATTCCCAACATTCGAACGGGGAGTGCCTCAGTTAGAAATTCACTTTCAA 22215 Query 16161 TATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAA-- 16218 | ||| || ||| || || || || | || | | |||| || ||| | Sbjct 22214 TCGCAACAGCCTCACGAATAATTTCG---ACAATACGAGCCA-CGGATGGCTTATGAGCA 22159 Query 16219 --GTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAAC 16276 |||| ||||||| | ||| |||||||| ||||||||| ||||| ||| ||| | Sbjct 22158 AGGTGTCTAAACATAAGACAGGCAAAATCTGTATGCAATCCCTCGTCTCTAGATATAAGT 22099 Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336 ||||||||||| || ||||| ||||| ||||| ||||| || | ||| ||||| | ||| Sbjct 22098 TCGTTTGAAAAGGTGAGACCGGGCATGAGTCCACGTTTCTTTAACCAGAATATGGAAGCA 22039 Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCG 16393 ||||| || |||||||| || || || || || ||||| |||| | ||| || ||| Sbjct 22038 AATGACCCTGAAAAGAAGATGCCCTCGACGGCAGCAAAGGCAATAATTCGATCTCCG 21982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462031189869000