Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq46208 239 4e-58 >seq46208 Length=8390 Score = 239 bits (264), Expect = 4e-58 Identities = 433/631 (69%), Gaps = 2/631 (0%) Strand=Plus/Minus Query 20038 AATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTA 20097 |||| ||||| ||| ||||||| ||| || ||| | ||| | | ||||| ||| Sbjct 6116 AATGTTTTTCCATTACTAACTACCAAAACTGTTTTTATAAGAGGAATCGCAGAAGAATTA 6057 Query 20098 TTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATT 20157 || ||||||||| ||||||||||||| | | |||||| |||||| || | ||| Sbjct 6056 TTTTGGTTTATTCGAGGATCAACAAATGCAAATGAGCTTAAGGAAAAAAAGGTGAGGATA 5997 Query 20158 TGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAG 20217 ||| | | | || | | |||||||| | | |||||| |||| | ||||| Sbjct 5996 TGGGATGGAAACTCCTCAAGGGAATTTTTAGATTCTATGGGATTTACCAACAGAGAAGAG 5937 Query 20218 GGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGAC 20277 || ||| | ||||| || |||||||| |||||| | |||| |||||| ||||| | | Sbjct 5936 GGAGATCTCGGTCCAGTATATGGATTCCAATGGCGTCATTATGGAGCGGAATACAATAAT 5877 Query 20278 ATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATT 20337 ||| |||| | || || ||||||| || || | ||||||| || || Sbjct 5876 ATGCACACTGACTACCAAGGGAAAGGAGTTGACCAGCTTTCTCATGTTATCAAGACTATA 5817 Query 20338 AAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCT 20397 ||| ||||||||||| | | || | | ||||||||||| |||||||| | || Sbjct 5816 AAAGATAACCCAAACGATCGTCGTATATTAATGTGCGCCTGGAATCCTAAAGATATTCCC 5757 Query 20398 TTAATGGCTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAATGAATT 20456 | |||||| | || || ||||| || | || |||||||| ||||| ||| |||| | Sbjct 5756 CTGATGGCTCTTCCCCCTTGTCAC-TGTTTGGCTCAATTTTATGTTGCCAATGGTGAACT 5698 Query 20457 GTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGC 20516 || |||||| | ||||||||||| || ||||||||| | || || ||||| || || || Sbjct 5697 ATCTTGTCAATTATATCAACGATCTGCAGATATGGGATTAGGAGTACCTTTTAACATAGC 5638 Query 20517 AAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTT 20576 ||||||| | || | ||| |||| | || ||||| || || | ||| | ||||| || Sbjct 5637 AAGTTATTCTCTCTTAACGATTATGTTGGCCCATGTGACCAATCTCAAACCTGGTGAATT 5578 Query 20577 AGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACA 20636 | || ||| |||| || || || | ||| ||||| || || | ||| || ||| Sbjct 5577 CATTCATACCTTAGGTGATGCACACGTATACAACAATCACATTGATGCCTTAGAAGAACA 5518 Query 20637 GTTAACACGACAACCAAAACAATTCCCAACT 20667 |||| || | ||| | |||||| ||| Sbjct 5517 ATTAAAGAGAGAGCCACGTCCATTCCCCACT 5487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398779397700925