Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq20317 95.1 1e-14 >seq20317 Length=5186 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||||||| || | || ||||| || ||| ||||| ||||||||||||||| | Sbjct 673 CCTCCTCTCAACCTCAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAC 732 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | | || | || |||| ||| ||||| || || ||||| || || || || || || Sbjct 733 AATGTACGTCCATCCTCCAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGGG 792 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| ||| || || ||| || | | |||| | | ||||| Sbjct 793 ATTCCTTCCTTATCCTGGATCTTGGTCTTGACATTTTCAATCGTGTCTGAAGCTTCCACT 852 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || || || ||||| ||||| ||||||||||||||||| Sbjct 853 TCAAGTGTGATGGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCAT 899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394674762271465