Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq27661 223 3e-53 >seq27661 Length=34041 Score = 223 bits (246), Expect = 3e-53 Identities = 364/519 (70%), Gaps = 8/519 (2%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 || ||||| ||||||||| ||| | || || || || ||||| ||| ||| Sbjct 22488 TAGAAATCGGCATCTAACGTAAATTTACGTTCAGCTGGCTTGGACATAACACCCGCCTTT 22429 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 |||||||| | ||| |||||||||| || || |||||||| || ||||| ||||||||| Sbjct 22428 TGATATTCCCCAACCTTTTTTTCAAAAAAATTGGTTTTACCATCAAGTGAAATATTTTCC 22369 Query 13976 ATAAAATCAAATGGATTT---GTTGACATAAACACTTTATCACAACCTAGTTCTAATAGT 14032 ||||||||||| ||||| ||| | |||| ||| |||| || |||| || Sbjct 22368 ATAAAATCAAAGGGATTCTCAGTT-AGGTAAAT--TTTCGGACAATTAAGCTCTACAAGA 22312 Query 14033 AATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGT 14092 | |||||| |||| || | ||||||||| ||| ||||||| ||||| || | | | Sbjct 22311 AGTCTATCTGCAACAAATTTAATATATTGCACCATGGAATCACAGTTCATTCCCAACATT 22252 Query 14093 TTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATA 14152 || || | | | |||| |||||| |||| || | |||||||| ||||| Sbjct 22251 CGAACGGGGAGTGCCTCAGTTAGAAATTCACTTTCAATCGCAACAGCCTCACGAATAATT 22192 Query 14153 ATCGT-AATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 14211 ||| |||| | || || || || ||| |||| || | ||| ||||| Sbjct 22191 -TCGACAATACGAGCCACGGATGGCTTATGAGCAAGGTGTCTAAACATAAGACAGGCAAA 22133 Query 14212 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 14271 ||| ||| | ||||| |||||| ||||||||||||||||| || | || ||||| Sbjct 22132 ATCTGTATGCAATCCCTCGTCTCTAGATATAAGTTCGTTTGAAAAGGTGAGACCGGGCAT 22073 Query 14272 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 14331 | ||| ||||| |||||||| ||||| | ||| ||||| || |||||||| || ||||| Sbjct 22072 GAGTCCACGTTTCTTTAACCAGAATATGGAAGCAAATGACCCTGAAAAGAAGATGCCCTC 22013 Query 14332 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGC 14370 || |||||||| || || | ||| ||||| || || || Sbjct 22012 GACGGCAGCAAAGGCAATAATTCGATCTCCGAAGGAGGC 21974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481844171602200