Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq66674 116 3e-21 seq42503 111 1e-19 seq20317 104 2e-17 >seq66674 Length=28361 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | || ||| || |||| |||||| || || || ||||| ||||| || || | Sbjct 28104 TCCTCCTCTTAATCTGAGGACCAGGTGAAGGGTGGACTCCTTTTGGATGTTATAATCTGA 28163 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | |||| | | ||| || |||||||| || ||| |||| | | |||||| || ||| Sbjct 28164 AAGTGTTCTTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGG 28223 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||||| |||||| | | ||| ||||| | || Sbjct 28224 AATACCTTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATTGTGTCTGAAGCTTCCAC 28283 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||||| |||||| |||| || |||| ||||| |||||||| |||||| Sbjct 28284 TTCAAGTGTGATGGTTTTTCCAGTCAGAGTTTTAACAAAAATCTGCATT 28332 Score = 105 bits (116), Expect = 5e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || ||||| ||||||||||| || || | | ||| | | ||||||||||||| Sbjct 27673 TGAAGAGTAGATTCCTTTTGAATGTTATAATCTGAAAGCGTTCTTCCATCTTCCAATTGT 27732 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||| | | ||||||||| ||| | |||||||| || ||||| | Sbjct 27733 TTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGAATTT-T 27791 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || || || | | ||| ||| ||| | ||| ||||| ||||| |||| || || Sbjct 27792 AGCTTTAACATTTTCAATAGTATCAGAAGCTTCGACTTCAAGAGTGATTGTTTTACCAGT 27851 Query 18302 CAATGTTTTTACAAAAATTTGCATT 18326 | ||||| ||||| ||||||||| Sbjct 27852 AAGGGTTTTGACAAAGATTTGCATT 27876 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||| || ||||||||||||||||| || |||| | || | ||||||| Sbjct 27211 ACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGATAAAGTGCGTCCATCTTCC 27270 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 |||||||| || ||| |||| | | ||| ||||| || | ||| ||||| || | Sbjct 27271 AATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCCTCCTTGTCTTGA 27330 Query 18237 ATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 |||| | || || || | ||| || ||| |||||| ||||| ||||| |||| Sbjct 27331 ATTT-TGGCTTTAACATTCTCAATGGTATCAGAGGGCTCAACTTCAAGAGTGATTGTTTT 27389 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || | |||||| || ||||| ||||| Sbjct 27390 ACCAGTGAGTGTTTTAACGAAAATCTGCAT 27419 Score = 98.7 bits (108), Expect = 8e-16 Identities = 154/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 18110 TCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACA 18169 ||| | ||| | ||||| || ||||| |||||||| || || || | | ||| | | Sbjct 27888 TCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAAAGGGTTCTTCC 27947 Query 18170 ATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTT 18229 ||||||||||||||| || ||| |||| | | ||||||||| ||| | |||||||| Sbjct 27948 ATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTT 28007 Query 18230 ATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGA 18288 ||| || | | || || || | | ||| ||||| | ||| ||||| |||| Sbjct 28008 ATCTTGGATCT-TGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACTTCAAGAGTGA 28066 Query 18289 TGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 | |||| ||||| || || || ||||| ||||||||| Sbjct 28067 TTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCATT 28104 >seq42503 Length=950 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | | ||| || |||| |||||| ||||| || || || || ||||| |||| Sbjct 411 TCCTCCTCTCAATCTGAGAACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCGGA 470 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||| ||||| ||||| ||| | || | |||||| ||||| || Sbjct 471 AAGAGTTCTTCCATCTTCTAATTGCTTGCCAGCAAATATCAATCTTTGCTGATCTGGAGG 530 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||||| |||||| | | ||| ||||| || || Sbjct 531 AATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATGGTGTCTGAGGCTTCAAC 590 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||||| |||||| |||| || || | ||||| || ||||| |||||| Sbjct 591 TTCAAGTGTGATGGTTTTTCCAGTGAGGGTTTTAACGAAAATCTGCATT 639 Score = 102 bits (112), Expect = 6e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | | ||| | ||| | ||||| || ||||| |||||||| || || || | Sbjct 639 TCCTCCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGA 698 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | ||||||||||||||| || ||| |||| | | ||||||||| ||| Sbjct 699 AAGNGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGG 758 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||||||||| || | | || || || | | ||| ||||| | ||| Sbjct 759 AATACCTTCCTTATCTTGGATCT-TGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGA 817 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||||| ||||| |||| ||||| || || || ||||| ||||||||| Sbjct 818 CTTCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCATT 867 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | | ||| || || | |||||| || || || ||||| ||||| || || | Sbjct 184 CCTCCTCTCAATCTGAGGACTAAGTGAAGGGTGGACTCCTTTTGGATGTTATAATCTGAA 243 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| | | ||| || |||||||| || ||| |||| | | |||||| || ||| Sbjct 244 AGTGTTCTTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGA 303 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| ||||| ||| || | ||| ||| ||| | ||| | Sbjct 304 ATACCTTCCTTATCTTGAATTTTAGCCTTAACATTCTCAATAGTATCAGAAGCTTCGACT 363 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 |||| ||||| |||| || || || || || ||||||||||||||| Sbjct 364 TCAAGAGTGATAGTTTTACCAGTTAAGGTCTTGACAAAAATTTGCATT 411 >seq20317 Length=5186 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | | || || || | ||| || || ||||| ||||||||||||||||||| Sbjct 672 TCCTCCTCTCAACCTCAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGA 731 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| | ||| |||||||| || || ||| |||| | | ||| ||||| ||| Sbjct 732 CAATGTACGTCCATCCTCCAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGG 791 Query 18218 CACGCCTTCCTTAT-CGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | |||||||||| | | | ||| | |||||| | | ||| ||||| | || Sbjct 792 GATTCCTTCCTTATCCTGGATCTTGGT-CTTGACATTTTCAATCGTGTCTGAAGCTTCCA 850 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||||| |||| || || | ||||| ||||| |||||||| Sbjct 851 CTTCAAGTGTGATGGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCAT 899 Score = 100 bits (110), Expect = 2e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | | |||||| |||| ||||| || || || ||||||||||| ||||| | Sbjct 216 TCCTCCTCTCAATCTAAGGACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAGTCTGA 275 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | |||||| |||||||| || ||| | || | ||| || ||||| || Sbjct 276 TAAAGTACGTCCATCTTCTAATTGTTTRCCAGCAAAAATCAATCTCTGCTGATCTGGAGG 335 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| |||| |||||| | | ||| |||||| | || Sbjct 336 AATTCCTTCCTTATCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCTGAAGCTTCCAC 395 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||||| ||||| |||| || || | ||||| |||||||| |||||| Sbjct 396 TTCAAGAGTGATTGTTTTTCCAGTGAGAGTTTTAACAAAAATCTGCATT 444 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || ||||| |||||||| || || || | | ||| | | ||||||||||||| Sbjct 13 TGAAGAGTGGATTCCTTTTGAATATTATAATCTGAAAGAGTTCTTCCATCTTCCAATTGT 72 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||| | | ||||||||| ||| | ||||||||||| || | | Sbjct 73 TTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTATCTTGGATCT-T 131 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || || || | | ||| ||||| | ||| ||||| ||||| |||| ||||| Sbjct 132 GGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACTTCAAGAGTGATTGTTTTACCGGT 191 Query 18302 CAATGTTTTTACAAAAATTTGCATT 18326 || || || ||||| ||||||||| Sbjct 192 TAAGGTCTTAACAAAGATTTGCATT 216 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | | ||| | ||| | ||||| || ||||| ||||| ||||||||||| | Sbjct 444 TCCTCCTCTCAATCTTAATACTAAATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCTGA 503 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || || | ||||||||| || || || ||| |||| ||||| || ||||| ||| Sbjct 504 CAAAGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCTGGGGG 563 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||| | ||| || | | ||| || || ||| || Sbjct 564 AATTCCTTCCTTATCTTGAATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGTTCAAC 623 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | || ||| | || || ||||| ||||| ||||| || |||||| Sbjct 624 CTCGAGCGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAGATCTGCATT 672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378959506997925