Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq46208 165 2e-35 seq27661 111 3e-19 >seq46208 Length=8390 Score = 165 bits (182), Expect = 2e-35 Identities = 443/671 (66%), Gaps = 5/671 (1%) Strand=Plus/Minus Query 35144 AAGAAGGACGATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTTC 35203 || |||| ||| | ||||||||||| || ||| |||||||| |||| ||||| || Sbjct 6188 AATAAGGGGGATCGCACTGGAACAGGGACAAAATCAATTTTTGGCGCCCAGATGAGATTT 6129 Query 35204 TCTCTTCGAGACGACACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTT 35263 ||| | ||| | | | ||||| | || |||||||| | |||| |||||| | Sbjct 6128 TCTTTACGAAATAATGTTTTTCCATTACTAACTACCAAAACTGTTTTTATAAGAGGAATC 6069 Query 35264 GTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAG 35323 | |||||| | | ||||| || | || ||| | || || || | | || Sbjct 6068 GCAGAAGAATTATTTTGGTTTATTCGAGGATCAACAAATGCAAATGAGCTTAAGGAAAAA 6009 Query 35324 AAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATAC 35383 ||| | || ||| | | || || |||||||||| || || || || | Sbjct 6008 AAGGTGAGGATATGGGATGGAAACTCCTCAAGGGAATTTTTAGATTCTATGGGATTTACC 5949 Query 35384 GATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCT 35443 | |||| |||||||||| | || || ||||| ||||||||||||||||||| ||| || Sbjct 5948 AACAGAGAAGAGGGAGATCTCGGTCCAGTATATGGATTCCAATGGCGTCATTATGGAGCG 5889 Query 35444 GAATATGATACC-TGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATAT 35502 ||||| ||| || | | || || || || || |||| || | | || | Sbjct 5888 GAATACAATAATATGCACA-CTGACTACCAAGGGAAAGGAGTTGACCAGCTTTCTCATGT 5830 Query 35503 ACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCC 35562 | ||||| | | ||| || ||| | ||| | | || | ||| || |||||||| Sbjct 5829 TATCAAGACTATAAAAGATAACCCAAACGATCGTCGTATATTAATGTGCGCCTGGAATCC 5770 Query 35563 TATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTG-CTCAATTTTATGTGG 35621 || ||| ||| ||| ||||||||||| || || ||| || || ||||||||||||| | Sbjct 5769 TAAAGATATTCCCCTGATGGCTCTTCCCCCTTGTCAC-TGTTTGGCTCAATTTTATGTTG 5711 Query 35622 CTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGC 35681 | ||||| ||| | || || || || ||||| ||| | |||| | || || || || | Sbjct 5710 CCAATGGTGAACTATCTTGTCAATTATATCAACGATCTGCAGATATGGGATTAGGAGTAC 5651 Query 35682 CCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAA 35741 | || || || ||| || ||||| | || | || ||||| | || ||| | Sbjct 5650 CTTTTAACATAGCAAGTTATTCTCTCTTAACGATTATGTTGGCCCATGTGACCAATCTCA 5591 Query 35742 AACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACACATTTATAATACCCACATTGAGG 35801 |||| || || || || | || | ||||| |||||| | || || | |||||||| | Sbjct 5590 AACCTGGTGAATTCATTCATACCTTAGGTGATGCACACGTATACAACAATCACATTGATG 5531 Query 35802 TGTTA-AAGAA 35811 ||| ||||| Sbjct 5530 CCTTAGAAGAA 5520 >seq27661 Length=34041 Score = 111 bits (122), Expect = 3e-19 Identities = 294/446 (66%), Gaps = 11/446 (2%) Strand=Plus/Plus Query 101914 AATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTT 101973 |||| ||||||||||||| || || || ||||||||| || |||| || ||||| || Sbjct 21991 AATTATTGCCTTTGCTGCCGTCGAGGGCATCTTCTTTTCAGGGTCATTTGCTTCCATATT 22050 Query 101974 CTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAG 102033 |||| | ||||| | || | |||| |||||||||| || || || | || ||||| Sbjct 22051 CTGGTTAAAGAAACGTGGACTCATGCCCGGTCTCACCTTTTCAAACGAACTTATATCTAG 22110 Query 102034 GGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATAC 102093 ||||| || | ||| || ||||| || | |||| | | | ||| | ||| Sbjct 22111 AGACGAGGGATTGCATACAGATTTTGCCTGTCTTATGTTTAGACA---CCTTGCTCATAA 22167 Query 102094 CCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATT 102153 ||||| | | ||| | |||||| | ||| || || |||||| ||||| Sbjct 22168 GCCATCCGTGGCTCGTATTGTCGAAATTATTCGTGAGGCTGTTGCGATTGAAAGTGAATT 22227 Query 102154 TCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTA 102213 ||| || | | || || ||| | | ||||||||||||| | | ||| || || Sbjct 22228 TCTAACTGAGGCACTCCCCGTTCGAATGTTGGGAATGAACTGTGATTCCATGGTGCAATA 22287 Query 102214 CATTGAATTTGTGGCAGATAAACTATTGGTTGA----AATGGGACTAGAAAAGCACTATA 102269 ||| ||||||| ||||||| ||| | || || ||| | | ||||| || Sbjct 22288 TATTAAATTTGTTGCAGATAGACTTCTTGTAGAGCTTAATTGTCC--GAAAATTTACCTA 22345 Query 102270 ATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTT 102329 | | || ||||| || ||||| |||||||| || || ||| ||||| |||| Sbjct 22346 A--CTGAGAATCCCTTTGATTTTATGGAAAATATTTCACTTGATGGTAAAACCAATTTTT 22403 Query 102330 TTGAAAAGAGAGTCGCCGAGTATCAA 102355 ||||||| | || | || |||||| Sbjct 22404 TTGAAAAAAAGGTTGGGGAATATCAA 22429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 988529547222575