Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq7940 138 4e-28 >seq7940 Length=1395 Score = 138 bits (152), Expect = 4e-28 Identities = 556/857 (65%), Gaps = 34/857 (4%) Strand=Plus/Minus Query 33534 TCCGTCTTGTACAGGCCGTTGATCGTTTCGGCCAGCGCATTGTCGTAGCTGTCGCCCCGG 33593 ||||| ||||| || || || || ||||| || | |||||||| || ||||||| | Sbjct 1096 TCCGTTTTGTAAAGTCCATTAATTGTTTCAGCTAAGGCATTGTCATAAGAGTCGCCCACG 1037 Query 33594 CTGCCGACTGAGGGCTCGATGCCGGCCTCAGCCAGCCGTTCGCTGTAGCGAATGCTGACG 33653 || || || || | | || || || || | | |||||| ||||||| ||| | Sbjct 1036 CTACCAACCGACGCGTTGAATCCCGCTTCTGTTAACCGTTCTGTGTAGCGTATGGATAAA 977 Query 33654 TATTGAGACCCCCTGTCGGAATGATGAATCAAAGTCCCGTCCTCGCCCGGTTGGCGGGCG 33713 ||||| |||| ||| |||||||||| ||| | || | | | | | Sbjct 976 TATTGGCTGCCCCGATCGCTGTGATGAATCA----CCCCTTTGGGCTTGCCTCGAAGCC- 922 Query 33714 TACAGCGCTTGTTCAAGTGCATCCAGAACAAAGTCCGTGGTCATCGACG--AGCTGACCC 33771 ||| |||||||| | ||||||||| | | || || ||| | ||| |||| Sbjct 921 -ACAATGCTTGTTCCAATGCATCCAGTATGAGATCAGTTCGCATATGCTTAAGC--ACCC 865 Query 33772 GCCAGCCAACAATACGGCGGGCGAACACGTCGATCACGAATGCCACGTACAGCCAGCCTT 33831 |||| || || || || | | | || || || || || || ||||| | | || Sbjct 864 GCCATCCGACGATGTAACGAGAGTAAACATCAATGACAAAAGCGACGTAAACAAATCCCG 805 Query 33832 GCCATGTCGAGACATACGTAAAATCCGACACCCAGAGCTGATTCGGTCGGTCAGCCTTGA 33891 ||| |||| |||||||||| || | |||||| || ||||| || || ||||| | | Sbjct 804 ACCAAGTCGCCACATACGTAATGTCTGCCACCCAAAGTTGATTGGGGCGCTCAGCACTAA 745 Query 33892 ACTGCCGGTTGACTCGGTCCAGCGGGCGCGGC-GCGGTCACATCGGTAATCGTCGTG-CG 33949 || || | || ||||| || | ||| || | | | || | | ||| || || Sbjct 744 ACACGCGCTGAACCAAGTCCAAAGG-CTTGGCTGCTGACTCGTCAGGCACCGTTGTAACG 686 Query 33950 AACACGCTTACCGCGAACTGCGCCACG--CAAGCCCTGCAGCTTCATCAACCGTCCGACC 34007 | ||| ||||||||| || || || || ||| | ||||||||| ||| | || Sbjct 685 CA-ACGTTTACCGCGAC--GCACCCCGACCAGGCCAAGGCGCTTCATCAGCCGCTCAACA 629 Query 34008 GTGCAGCGTGCCACCGTAATGCCTTCCCGGTTCATCTGCTTCCAGACCTTCGGCACGCCG 34067 ||||||||||| ||||| || ||| ||| | ||| ||| || || | | || Sbjct 628 GTGCAGCGTGCTACCGTGATTGATTCTTTGTTGAGCTGTAACCACACTTTACGAGCCCCA 569 Query 34068 TAGACCTGCATGTTGGCCTGCCAGACACGCTTGATCTCCGGTTGCAAAAGCTCATCGCGT 34127 || || | | ||| |||||| || | ||||| ||| || ||||| || || Sbjct 568 TAATTTTGGTCGCTTTCCTCCCAGACGCGTTGTATCTCGGGTATCAGCAGCTCCTCCCGC 509 Query 34128 TTCGCGCGGGCGCAGCG--TTTC--GACGGATCGCGAAGTTGTGCTGCATGGCGTCGGTA 34183 || || || | ||||| |||| |||| | ||| ||||| |||||| | || Sbjct 508 TTTGCACGATCACAGCGACTTTCTGGACGCT--GTGAAA--GTGCTTGATGGCGCCAATA 453 Query 34184 GCCCGACGGGGCAATCCGCAAGACCTTGCAGATCGGCTCGACCCCGAAGGTGT-CGCGAT 34242 || || |||| | |||| | |||||||| |||||||| ||| || ||| | |||| Sbjct 452 AGTAGAAGGTGCAAGCGGCAACAGTTTGCAGATGGGCTCGACACCGTAG-TGTGCTCGAT 394 Query 34243 GCTGATCAATGAAGGCCTTCAGGACTTGAAACGGCGGTCGAGCTCCGCCTGAGCGAAAAA 34302 ||||| ||||||||| || ||||| ||||||||||||||| |||||||| Sbjct 393 ATTGATCGATGAAGGCCACCATCACTTGGGTTTGCGGTCGAGCTCCGCTGCCGCGAAAAA 334 Query 34303 CGCGCTCGCCAGTTTG---AGAATCTCGTTGGTCCGGCGCAGTTCCTTGACCTCGCGCTC 34359 || || |||| || |||||||||| ||| ||||| ||||| || || Sbjct 333 AGC---AGCGGCTTTGCGTAGTATCTCGTTGGCCCGCTTGAGTTCGCGCACCTCACGTTC 277 Query 34360 CAAGGCTTTGATGCGTT 34376 | ||||| |||||| Sbjct 276 AAGCTCTTTGGTGCGTT 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170503446999550