Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq58440 212 8e-50 seq27661 196 6e-45 seq4608 89.7 6e-13 >seq58440 Length=15377 Score = 212 bits (234), Expect = 8e-50 Identities = 581/881 (66%), Gaps = 7/881 (1%) Strand=Plus/Minus Query 62987 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 63046 ||||| || ||| || || || | |||| || || |||||||| || || | |||||| Sbjct 5280 ATATTCTACTATTTCGGTACATAAATTAGAGCATTTTATAGTTCCCAAGTTCTTTTGATT 5221 Query 63047 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63106 | || || || | ||||| || | ||| | ||||| ||||||||||| || || Sbjct 5220 AGATTTCCGATTGCAAGAGTCCTTGTATAACATGTAGGGAGTCCCAGTTTCAATTTGCGA 5161 Query 63107 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCT 63166 ||| || || || | ||| || |||| || || || | |||| Sbjct 5160 TTCAATGATGGCCTCCCACACTTTATGAGCAGGTACCTGCCGCCTGAATTTGTTTTCATC 5101 Query 63167 TTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACA 63226 || ||| | ||| | | || || || || |||||||||| || || | ||||| Sbjct 5100 CTCATATTTAAGATATAGTTTCTCAAAATCTTCACCCCAAACATCATCTAACCCTGGACA 5041 Query 63227 TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATC 63286 ||||| |||||||| | ||| || || || | |||||||||||| || | ||| Sbjct 5040 TTCATGAGGACACATAAGGCTCCAAATACCATCCTCTTCCACTCGTTTCATGAATAAATC 4981 Query 63287 AGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCT 63345 ||||||||||||||| ||| |||| ||| |||| || || || || || ||||| | Sbjct 4980 AGGAATCCAAAGAGC-ATAGAATAAATCCCTTGCCCTTTGCTCTTCAGCCCCCGTATTTT 4922 Query 63346 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 63405 | || || || || | | || ||| | |||||| ||||| || || || || | Sbjct 4921 TACGTAGTTCTAGAAAATCAAAAACATCCGCATGCCAAGGTTCTAAATAAATTGCAAATG 4862 Query 63406 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 63465 | ||||||| |||||| || || || || | ||| | || || |||||| |||||| | Sbjct 4861 CGCCAGGCCTTTTGTTACCACCTTGGTCAACATATTTCGCCGTATTATTAAAAACTCGAA 4802 Query 63466 ACATTGGAATAATACCGTTTGA-TATACCATTGGTACCGGAGATATAGCCTCCACTGGCA 63524 ||| || | ||| || || || ||| |||||||| || | ||||| || | || Sbjct 4801 GCATGGGTACAATCCCATTAGAGTAT-CCATTGGTCCCCGCAATATAAGAACCTTTTGCT 4743 Query 63525 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63584 |||||| | ||| | ||| || || || || ||| || || | ||| | || Sbjct 4742 CGAATACAATGAATATTAATACCGATCCCTCCAGCGGATTTTGAAATAATTGCAGTTTGT 4683 Query 63585 TTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCT 63643 || | || ||||| |||||||| ||| ||| | ||| ||||| || ||| ||||| Sbjct 4682 TTCAGAGTATCATAAATGCCTTCAATGGAGTCAGAGGACATCGTTAA-TAAAAAGCAGCT 4624 Query 63644 AGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63703 || | ||| | | || | ||||| || | || ||||| || || || || | Sbjct 4623 TGATAATTGAGGTTTTGGTGTAGCAGCATTGAAAAGTGTGGGAGAGGCATGTGTGAAATA 4564 Query 63704 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 63763 || ||| || || ||||| |||| || | || ||||| | ||||| || Sbjct 4563 CCCTTGAGAGAGAAGGTTGTAGGTCTTGATCACACCTTCAATATCTTCTCCGTGAATACC 4504 Query 63764 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAA 63823 ||| | ||| | ||| | ||| || || || |||||||| | ||| ||| ||||| | Sbjct 4503 TACAGAGACTCTCATCAGCATATGTTGTGGCCTTTCAACCACTTTTTTGCCAATTTTGAG 4444 Query 63824 CAAGTAGGATTTTTCCAAAGTTTTAAAAC-CAAAATAGTTG 63863 |||||| | ||| | |||||| || | |||| ||||| Sbjct 4443 TAAGTAGCTTCGTTCTAGAGTTTTGAACCTGAAAAGAGTTG 4403 Score = 199 bits (220), Expect = 5e-46 Identities = 455/687 (66%), Gaps = 10/687 (1%) Strand=Plus/Minus Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096 ||||||| |||||| ||||||| | | || | ||| ||||| ||||| ||||| || Sbjct 6368 TTGTCCACTGTGAACTGAATGGCACTAGCCGCTGCTTTGGTACGAAGATAATACATCCCT 6309 Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156 ||||| | ||||| |||| ||||| |||||||| || ||||| || | || Sbjct 6308 GTTTTCAATCCGAGTTTCCAACCGTAGAAATGCATGGATGTAAGTTTTCCGTAGTTAGGC 6249 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 | ||| ||||| || |||| |||||||||||||| || || || || | || |||||| Sbjct 6248 TGTGCGATATGTATGTTCAAGGATTGACTTTGATCAATAAAAGCCCCGCGATCAGCAGCC 6189 Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 62276 |||| | || ||||||||| | ||||||||| | |||||||||| ||||||||| Sbjct 6188 ATTTGAAGGACCGTCTTTTGAGAAATTTCCCAGACTGTTTTATAAAGCTTCTTAATATCG 6129 Query 62277 TCTGGAAGGTTTG-----TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGA 62331 || |||| |||| |||| || | ||||||| ||| | ||||| | | || | Sbjct 6128 TCAGGAA--TTTGAGGAATATTTTGTACGGATCCATTATCCGCAATAATATTTTGTTTCA 6071 Query 62332 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTT 62391 | || |||| ||| | | | || || || |||| | | ||| | || || | || Sbjct 6070 TTTCGTCATCCCAAAGATCCATATCAGTCAAGTCTCTCAATAAATGTTGATTCACAATTT 6011 Query 62392 GGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACT 62451 | ||||| || || || || | | | ||||||||| || || | || | | Sbjct 6010 GAAATTCACCGGATAAGACGCGTCTGGAGTAAATATTTGATGTGTATGCCTCAATTCCTT 5951 Query 62452 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62511 |||| || || | ||||| || || || || || ||||| || || | | | || Sbjct 5950 CATTGTTACCTAGTATTTGGGCCGTGGAGGCGGTTGGCATGGGAGCAAGAAGAAGGGAAT 5891 Query 62512 TTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACG 62571 | | | |||| | | ||||| | |||| | | ||||| ||| | || | | Sbjct 5890 TCCGTACTCCGTCTTTAGCAATTTTTGCCTTTAATTTTGACCAATCCCACATATTTGTGG 5831 Query 62572 GTACAACANNNNNNNNNNNAT---ATTGTAGAATACCGTTACTGGCGTACGATCCTACAT 62628 | |||| || ||||||| | || | ||| | |||||| || Sbjct 5830 GGGTAACACCTTCCCAAAGATCAAATTGTAGCAACCCTTGACTTACTGGAGATCCTTTAT 5771 Query 62629 ATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAAT 62688 |||| || |||| ||| | ||||||||| ||||||||| ||||| |||||||| | Sbjct 5770 ATGTCTCGTATGTTCCCAATTCAGCAGCTAGTTCACAACTCGCTTCTAAGGCACCGTAGT 5711 Query 62689 AAATGGTTTCAAAGATCTTCTTATTTA 62715 |||| |||||||| || | || |||| Sbjct 5710 AAATAGTTTCAAATATTTGTTTGTTTA 5684 >seq27661 Length=34041 Score = 196 bits (216), Expect = 6e-45 Identities = 333/476 (70%), Gaps = 15/476 (3%) Strand=Plus/Minus Query 33271 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTT 33330 |||| |||||||| ||| ||||| ||||| || || |||||| |||||||| |||| Sbjct 22450 CTTG-GACATAACACCCGCCTTTTGATATTCCCCAACCTTTTTTTCAAAAAAATTGGTTT 22392 Query 33331 TTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttt 33390 | || || | ||| ||||||||||| |||||||| ||||| | ||||||||| Sbjct 22391 TACCATCAAGTGAAATATTTTCCATAAAATCAAAGGGATTCTCAGTTAGGTAAATTTTCG 22332 Query 33391 tAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATT- 33449 | | | || || | ||||||||| || |||| |||||| | || ||| Sbjct 22331 GACAATTAAGCTCTACAAGAAGTCTATCTGCAACAAATTTAATATAT---TGCACCATGG 22275 Query 33450 --TCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAA 33507 ||||| |||||||| | | | ||| || || ||| |||| |||||||| ||||| Sbjct 22274 AATCACAGTTCATTCCCAACATTCGAACGGGGAGTGCCTCAGTTAGAAATTCACTTTCAA 22215 Query 33508 TGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGG-TGGATG-TAATAA 33565 | | || || | ||||| || | | | ||| ||| | | | | Sbjct 22214 TCGCAACAGCCTCACGAATAATTTCGACAA----TACGAGCCACGGATGGCTTATGAGCA 22159 Query 33566 A--TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAAT 33623 | ||| ||||||| | ||| || ||||| |||| |||||||||||| || | | Sbjct 22158 AGGTGTCTAAACATAAGACAGGCAAAATCTGTATGCAATCCCTCGTCTCTAGATATAAGT 22099 Query 33624 TCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCG 33683 ||||| ||||| ||||| |||||||| || ||||| || || | ||| ||||||||||| Sbjct 22098 TCGTTTGAAAAGGTGAGACCGGGCATGAGTCCACGTTTCTTTAACCAGAATATGGAAGCA 22039 Query 33684 AATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC 33739 ||||| || ||||||||||| || || || |||||||||||||||| || ||||| Sbjct 22038 AATGACCCTGAAAAGAAGATGCCCTCGACGGCAGCAAAGGCAATAATTCGATCTCC 21983 Score = 132 bits (146), Expect = 6e-26 Identities = 215/306 (70%), Gaps = 5/306 (2%) Strand=Plus/Minus Query 33873 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33932 |||||||| || |||||||| || || || || ||||| |||||||||||||| ||||| Sbjct 21775 TACATTTCGGAGTGAATGTTCTCGATTGCAATTTGAAACCCGTAGAAACATCTCGCCTCC 21716 Query 33933 GTAATCTGCACTT-CTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACT 33991 |||| ||| |||| |||| ||||| || | | || || ||||| ||||| || Sbjct 21715 GTAACCTGTACTTCCTGT-GTAAATCTCTCCACAATGTTCTCGTTCACAATTCCGTCCGA 21657 Query 33992 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT--- 34048 || || ||||| ||||| || || |||||| || ||| || | | ||| Sbjct 21656 CGCAGCGAAAAATGCCAAAACTCGTGATATAAAGTACCGTTCCTCATCATTCAATTTCTC 21597 Query 34049 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 34108 | ||| || | | || || | |||||||| ||||| |||||||| ||| | Sbjct 21596 CTCCCAGTCGATCAAGTCCTTGCTGAGGTCCACTTCCTCCACAGTCCAAAAGCTTGCTAC 21537 Query 34109 TGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATT 34168 ||||| |||||||| ||||| || ||| ||||| ||| || | || || |||||||| Sbjct 21536 GGCCTTCTTATACATGTTCCAAATATCAAAATATTCGATAGGAAGGATTACGAATCTATT 21477 Query 34169 TGGATT 34174 ||||| Sbjct 21476 AGGATT 21471 >seq4608 Length=17199 Score = 89.7 bits (98), Expect = 6e-13 Identities = 159/228 (70%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 155782 GAAGGATTGGTCTTAAAAGATATTAATGGCGTATACGAACCGGGAAAGAGAAGATGGTTA 155841 ||||||||||| | |||||||| ||| || || ||||| ||| || ||| | Sbjct 12424 GAAGGATTGGTACTCAAAGATATCAATTCTACTTATGAGCCGGGGAAGCGACATTGGCTT 12365 Query 155842 AAAATAAAGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAGTA 155901 || | || ||| |||||||| || || | ||||||||| |||| || || || || Sbjct 12364 AAGGTCAAAAAAGATTATTTGAATGATGGGGCAATGGCAGATACTGCTGACTTGGTTGTT 12305 Query 155902 CTAGGTGCCTACTATGGTAAAGGAGGAAAGGGTGGTATCATG-GCAGTCTTTCTAATGGG 155960 | |||| | | ||||| |||| ||||||||| ||| || ||| | ||| | ||||| Sbjct 12304 TTGGGTGGATGGTTTGGTACAGGACAAAAGGGTGGGATCGTGAGCA-TATTTTTGATGGG 12246 Query 155961 TTGTTACGACGATGAATCCGGTAAATGGAAGACGGTAACTAAATGTTC 156008 ||| ||||| | || ||||||| ||| ||||| ||| |||| Sbjct 12245 TTGCTACGATACCTCAACCAAAAAATGGATGACTGTAAC-AAAGGTTC 12199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629162865241200