Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq58440 237 1e-57 >seq58440 Length=15377 Score = 237 bits (262), Expect = 1e-57 Identities = 578/871 (66%), Gaps = 16/871 (2%) Strand=Plus/Minus Query 37735 CTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGA 37794 ||| ||| || || || ||||| | |||| || | || |||||||| || ||||| Sbjct 5282 CTATATTCTACTATTTCGGTACATAAATTAGAGCATTTTATAGTTCCCAAGTTCTTTTGA 5223 Query 37795 TTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGA 37854 || ||||| ||| ||||| || || |||| || || || || || ||| ||||| Sbjct 5222 TTAGATTTCCGATTGCAAGAGTCCTTGTATAACATGTAGGGAGTCCCAGTTTCAATTTGC 5163 Query 37855 GCCTCGATAATAGATTTCCATAAACTTCTTGCTT---TAACGATCGCTTTAAttt-tttt 37910 | || || || | | ||| | ||| || || | ||| | ||||| |||| Sbjct 5162 GATTCAATGATGGCCTCCCACA--CTTTATGAGCAGGTACCTGCCGCCTGAATTTGTTTT 5105 Query 37911 CTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCC 37970 | | | | |||| | ||||| ||| | |||||| | ||||| ||||| ||| || Sbjct 5104 CATCCT--CATATTTAAGATATAGTTTCTCAAAATCTTCACCCCAAACATCATCTAACCC 5047 Query 37971 TGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAA 38030 ||||||||| |||||||| || ||| |||| | ||| || |||| ||| || Sbjct 5046 TGGACATTCATGAGGACACATAAGGCTCCAAATACCATCCTCTTCCACTCGTTTCATGAA 4987 Query 38031 TAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTAC 38090 ||||||||| | ||| | ||| |||||||| | | || | ||||| ||| Sbjct 4986 TAAATCAGGAATCCAAAGAGCATAGAATAAATCCCTTGCCCTTTGCTCTTCAGCCCCCGT 4927 Query 38091 ATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGA 38150 ||| || | || ||||||||| || | ||| || ||||| ||||||| |||||| | Sbjct 4926 ATTTTTACGTAGTTCTAGAAAATCAAAAACATCCGCATGCCAAGGTTCTAAATAAATTGC 4867 Query 38151 CATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATAT 38210 | ||| || || ||||| | ||| || || | || |||| | | || |||||| | | Sbjct 4866 AAATGCGCCAGGCCTTTTGTTACCACCTTGGTCAACATATTTCGCCGTATTATTAAAAAC 4807 Query 38211 TCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTT 38270 || | ||| ||||| || |||||||| | || || | || | ||||||| ||| || Sbjct 4806 TCGAAGCATGGGTACAATCCCATTAGAGTATCCATTGGTCCCCGCAATATAAGAACCTTT 4747 Query 38271 AGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCA 38330 ||||| ||| | || | || || || || || |||||| || | || Sbjct 4746 TGCTCGAATACAATGAATATTAATACCGATCCCTCCAGCGGATTTTGAAATAATTGCAGT 4687 Query 38331 TTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACA 38390 |||||| | |||||| | || ||||| || |||| || | || || ||| || Sbjct 4686 TTGTTTCAGAGTATCATAAATGCCTTCAATGGAGTCAGAGGACATCGTTAATAAAAAGCA 4627 Query 38391 ACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAA 38450 || || | |||||| ||| || | || || || | ||| ||||| |||||| |||| Sbjct 4626 GCTTGATAATTGAGGTTTTGGTGTAGCAGCATTGAAAAGTGTGGGAGAGGCATGTGTGAA 4567 Query 38451 CCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAAT 38510 | || || | | || || || | || ||| | || ||||| | |||||||| Sbjct 4566 ATACCCTTGAGAGAGAAGGTTGTAGGTCTTGATCACACCTTCAATATCTTCTCCGTGAAT 4507 Query 38511 ACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATT----ATTCT 38566 ||||| ||| || ||||| |||||||||||||| ||||| | | ||| || ||| | Sbjct 4506 ACCTACAGAGACTCTCATCAGCATATGTTGTGGCCTTTCAACCACTTTTTTGCCAATTTT 4447 Query 38567 GTTTAAGTAGATACGATTTTTCTAATGTTTT 38597 | ||||||| | || ||||| ||||| Sbjct 4446 GAGTAAGTAGCTTCG----TTCTAGAGTTTT 4420 Score = 206 bits (228), Expect = 2e-48 Identities = 478/713 (67%), Gaps = 28/713 (4%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || |||||||| | || | | | | || | ||| || | | ||||||||| || ||| Sbjct 6365 TCCACTGTGAACTGAATGGCACTAGCCGCTGCTTTGGTACGAAGATAATACATCCCTGTT 6306 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || | || | | |||| ||||| |||||||| || |||||| |||| |||| | Sbjct 6305 TTCAATCCGAGTTTCCAACCGTAGAAATGCATGGATGTAAGTTTTCCGTAGTTAGGCTGT 6246 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | |||| ||| ||| |||||||||||||| ||||| || || | || || |||||| Sbjct 6245 GCGATATGTATGTTCAAGGATTGACTTTGATCAATAAAAGCCCCGCGATCAGCAGCCATT 6186 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 | | | |||||||| || ||||| || |||||||| | | || |||| || Sbjct 6185 TGAAGGACCGTCTTTTGAGAAATTTCCCAGACTGTTTTATAAAGCTTCTTAATATCGTCA 6126 Query 37030 GGTAAATCTAA-----ATGTTGAATAGAACCATTAT--GTAACACAATTGTATTCTTTAT 37082 || ||| | | || ||| | || ||||||| | || | ||| | || | || Sbjct 6125 GG--AATTTGAGGAATATTTTGTACGGATCCATTATCCGCAATAATATTTTGTT--TCAT 6070 Query 37083 GTCATTATTCCACATATTTCTACTTATTAGT----TCTCTCAATAGGTGTGGATTTACAA 37138 || | || ||| | || | ||| ||| |||||||||| ||| |||| |||| Sbjct 6069 TTCGTCATCCCAAAGATC----CATATCAGTCAAGTCTCTCAATAAATGTTGATTCACAA 6014 Query 37139 CCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGG 37198 ||||| || || ||||| || | ||| | || ||||| || |||| ||||| Sbjct 6013 TTTGAAATTCACCGGATAAGACGCGTCTGGAGTAAATATTTGATGTGTATGCCTCAATTC 5954 Query 37199 ACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGC 37258 ||||| |||| || |||||| | || || || || ||||| || || | |||||| Sbjct 5953 CTTCATTGTTACCTAGTATTTGGGCCGTGGAGGCGGTTGGCATGGGAGCAAGAAGAAGGG 5894 Query 37259 TATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTG 37318 ||| | | ||| | | || |||| | |||| || ||||||||| | || || Sbjct 5893 AATTCCGTACTCCGTCTTTAGCAATTTTTGCCTTTAATTTTGACCAATCCCACATATTTG 5834 Query 37319 TTGGGTT----CTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCG 37374 | ||| | | || ||| | |||| ||||||| | |||| ||| ||||||| | Sbjct 5833 TGGGGGTAACACCTTC-CCAAAGATCAAATTGTAGCAACCCTTGACTTACTGGAGATCCT 5775 Query 37375 TTATATGTCTCATAAGGTCCGTAAATT--TTAGCTAGTTCGCAACTAGATTCTAGTGCGG 37432 ||||||||||| || | ||| |||| ||||||||| ||||| | ||||| || Sbjct 5774 TTATATGTCTCGTATGTTCC--CAATTCAGCAGCTAGTTCACAACTCGCTTCTAAGGCAC 5717 Query 37433 CATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTA 37485 | || || || ||||| || |||||| | ||||||| | ||||| || ||| Sbjct 5716 CGTAGTAAATAGTTTCAAATATTTGTTTGTTTAATAGTAGGGCTTCATCACTA 5664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468037739187600