Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq58440 203 4e-47 seq27661 194 2e-44 seq4608 96.9 5e-15 >seq58440 Length=15377 Score = 203 bits (224), Expect = 4e-47 Identities = 579/881 (66%), Gaps = 7/881 (1%) Strand=Plus/Minus Query 65780 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 65839 ||||| || ||| || || || | |||| || || || ||||| || || | |||||| Sbjct 5280 ATATTCTACTATTTCGGTACATAAATTAGAGCATTTTATAGTTCCCAAGTTCTTTTGATT 5221 Query 65840 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 65899 | || || || | ||||| || | ||| | ||||| ||||||||||| || || Sbjct 5220 AGATTTCCGATTGCAAGAGTCCTTGTATAACATGTAGGGAGTCCCAGTTTCAATTTGCGA 5161 Query 65900 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCT 65959 ||| || || || | ||| || |||| || || || | ||||| Sbjct 5160 TTCAATGATGGCCTCCCACACTTTATGAGCAGGTACCTGCCGCCTGAATTTGTTTTCATC 5101 Query 65960 TTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACA 66019 || ||| ||| | | || || || || |||||||||| || || || ||||| Sbjct 5100 CTCATATTTAAGATATAGTTTCTCAAAATCTTCACCCCAAACATCATCTAACCCTGGACA 5041 Query 66020 TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATC 66079 ||||| |||||||| | ||| || || || | |||||||||||| || | ||| Sbjct 5040 TTCATGAGGACACATAAGGCTCCAAATACCATCCTCTTCCACTCGTTTCATGAATAAATC 4981 Query 66080 AGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 66138 ||||||||||||||| ||| |||||||| || | || || || || || ||||| | Sbjct 4980 AGGAATCCAAAGAGC-ATAGAATAAATCCCTTGCCCTTTGCTCTTCAGCCCCCGTATTTT 4922 Query 66139 TTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAA 66198 | || || || || | | || ||| |||||| ||||| || || || || | Sbjct 4921 TACGTAGTTCTAGAAAATCAAAAACATCCGCATGCCAAGGTTCTAAATAAATTGCAAATG 4862 Query 66199 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 66258 | ||||||| |||||| || || || || | ||| | || || |||||| |||||| | Sbjct 4861 CGCCAGGCCTTTTGTTACCACCTTGGTCAACATATTTCGCCGTATTATTAAAAACTCGAA 4802 Query 66259 ACATTGGAATAATACCATTGGATGTA-CCATTGGTCCCGGAGATATAGCTTCCACTTGCA 66317 ||| || | ||| ||||| || ||| ||||||||||| | ||||| || |||| Sbjct 4801 GCATGGGTACAATCCCATTAGA-GTATCCATTGGTCCCCGCAATATAAGAACCTTTTGCT 4743 Query 66318 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 66377 |||||| | ||| | ||| || || || || ||| || || | ||| | || Sbjct 4742 CGAATACAATGAATATTAATACCGATCCCTCCAGCGGATTTTGAAATAATTGCAGTTTGT 4683 Query 66378 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCT 66436 || | |||||||| ||||| || || ||| ||| ||||| || ||| ||||| Sbjct 4682 TTCAGAGTATCATAAATGCCTTCAATGGAGTCAGAGGACATCGTTAA-TAAAAAGCAGCT 4624 Query 66437 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 66496 || | ||| | || | ||||| || | || ||||| || || || || | Sbjct 4623 TGATAATTGAGGTTTTGGTGTAGCAGCATTGAAAAGTGTGGGAGAGGCATGTGTGAAATA 4564 Query 66497 TTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC 66556 || ||| || || ||||| |||| || | || ||||| | ||||| || Sbjct 4563 CCCTTGAGAGAGAAGGTTGTAGGTCTTGATCACACCTTCAATATCTTCTCCGTGAATACC 4504 Query 66557 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA 66616 ||| | ||| | ||| | ||| || || || |||||||| | || ||| ||||| | Sbjct 4503 TACAGAGACTCTCATCAGCATATGTTGTGGCCTTTCAACCACTTTTTTGCCAATTTTGAG 4444 Query 66617 CAAGTAGGATTTTTCCAAAGTTTTAAAAC-CAAAATAGTTG 66656 |||||| | ||| | |||||| || | |||| ||||| Sbjct 4443 TAAGTAGCTTCGTTCTAGAGTTTTGAACCTGAAAAGAGTTG 4403 Score = 203 bits (224), Expect = 4e-47 Identities = 455/687 (66%), Gaps = 10/687 (1%) Strand=Plus/Minus Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889 ||||||| |||||| ||||||| | | || | ||| ||||| ||||| ||||| || Sbjct 6368 TTGTCCACTGTGAACTGAATGGCACTAGCCGCTGCTTTGGTACGAAGATAATACATCCCT 6309 Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949 ||||| | ||||| |||| ||||| |||||||| || ||||| || | || Sbjct 6308 GTTTTCAATCCGAGTTTCCAACCGTAGAAATGCATGGATGTAAGTTTTCCGTAGTTAGGC 6249 Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009 | ||| ||||| || |||| |||||||||||||| || || || || | || |||||| Sbjct 6248 TGTGCGATATGTATGTTCAAGGATTGACTTTGATCAATAAAAGCCCCGCGATCAGCAGCC 6189 Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 65069 |||| | || ||||||||| | ||||||||| | |||||||||| ||||||||| Sbjct 6188 ATTTGAAGGACCGTCTTTTGAGAAATTTCCCAGACTGTTTTATAAAGCTTCTTAATATCG 6129 Query 65070 TCTGGAAGGTTTG-----TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA 65124 || |||| |||| |||| || | ||||||| ||| || ||||| | | || | Sbjct 6128 TCAGGAA--TTTGAGGAATATTTTGTACGGATCCATTATCCGCAATAATATTTTGTTTCA 6071 Query 65125 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 65184 | || |||| ||| | | | || || || |||| | | ||| |||| || | || Sbjct 6070 TTTCGTCATCCCAAAGATCCATATCAGTCAAGTCTCTCAATAAATGTTGATTCACAATTT 6011 Query 65185 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACT 65244 ||||||| || || || || | | | ||||||||| || || | || | | Sbjct 6010 GAAATTCACCGGATAAGACGCGTCTGGAGTAAATATTTGATGTGTATGCCTCAATTCCTT 5951 Query 65245 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 65304 |||| || || | ||||| || || || || || ||||| || || | | | || Sbjct 5950 CATTGTTACCTAGTATTTGGGCCGTGGAGGCGGTTGGCATGGGAGCAAGAAGAAGGGAAT 5891 Query 65305 TTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACG 65364 | | | |||| | | ||||| | |||| | ||||| ||| | || | | Sbjct 5890 TCCGTACTCCGTCTTTAGCAATTTTTGCCTTTAATTTTGACCAATCCCACATATTTGTGG 5831 Query 65365 G---TACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACAT 65421 | ||| | |||||| | || | ||| | |||||| || Sbjct 5830 GGGTAACACCTTCCCAAAGATCAAATTGTAGCAACCCTTGACTTACTGGAGATCCTTTAT 5771 Query 65422 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 65481 |||| ||||||| ||| | ||||||||||||||||||| ||||| |||||||| | Sbjct 5770 ATGTCTCGTATGTTCCCAATTCAGCAGCTAGTTCACAACTCGCTTCTAAGGCACCGTAGT 5711 Query 65482 AAATGGTTTCGAAGATCTTCTTATTTA 65508 |||| ||||| || || | || |||| Sbjct 5710 AAATAGTTTCAAATATTTGTTTGTTTA 5684 Score = 87.8 bits (96), Expect = 2e-12 Identities = 170/251 (68%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 66792 ATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCG 66851 ||||||||| || | |||||||| |||||||| ||||| ||||| || || | ||| Sbjct 4194 ATCACTTCAGAGAAAACCTTTTTTGTCTCTTTGTGAAGATTGGATACAGCAATCCGAGCA 4135 Query 66852 GCTATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGA 66911 || | ||||| || || ||||| | || || || || || ||||| || || | | Sbjct 4134 GCAAGGATGGCGTAGTCTGGATGCTTCGTTGTCATCGTTGCCGCAATTTCCGCAGCTAAA 4075 Query 66912 GTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATT 66971 ||||||| || | || | ||| || ||| | ||| || ||||| | || || Sbjct 4074 TTGTCCAACTCAATAGTGGATACACCCGGATAGAGTCCCGAAATTACCTTAAGAGTAATG 4015 Query 66972 TTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTG 67031 | |||| | |||||| ||| | |||||||| | ||| | |||||||||| Sbjct 4014 GCCGTGGGATTCACATGATCCATGTCCAGCCCATAACAAAGCTTTTGTACACGAGATGTG 3955 Query 67032 ATTTTATCAAA 67042 || ||||| || Sbjct 3954 ATCTTATCGAA 3944 >seq27661 Length=34041 Score = 194 bits (214), Expect = 2e-44 Identities = 336/479 (70%), Gaps = 21/479 (4%) Strand=Plus/Minus Query 35847 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTT 35906 |||| |||||||| ||| ||||| ||||| || || |||||| |||||||| |||| Sbjct 22450 CTTG-GACATAACACCCGCCTTTTGATATTCCCCAACCTTTTTTTCAAAAAAATTGGTTT 22392 Query 35907 TACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTA--TAAAtttt 35964 |||| || | ||| ||||||||||| ||||| || ||||| | ||| |||||||| Sbjct 22391 TACCATCAAGTGAAATATTTTCCATAAAATCAAAGGGATTCTCAG--TTAGGTAAATTTT 22334 Query 35965 tttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCAT 36024 | | | || || | ||||||||| ||||||| |||||| | || ||| Sbjct 22333 CGGACAATTAAGCTCTACAAGAAGTCTATCTGCAACAAATTTAATATAT---TGCACCAT 22277 Query 36025 T---TCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTC 36081 ||||| |||||||| | | | ||| || || ||| |||| |||||||| ||| Sbjct 22276 GGAATCACAGTTCATTCCCAACATTCGAACGGGGAGTGCCTCAGTTAGAAATTCACTTTC 22217 Query 36082 AATAGAGACCGCGTCTGTTATAATA--GATATTACTGTTTCTTCACTCGGTGGAT-ACAA 36138 ||| | || || || ||||| || | ||| ||| | ||| | | | Sbjct 22216 AATCGCAACAGCCTCACGAATAATTTCGACAATACGAGC----CACG-GATGGCTTATGA 22162 Query 36139 TAAA--TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATT 36196 || ||| ||||||| | ||| || ||||| || | |||||||||||| || Sbjct 22161 GCAAGGTGTCTAAACATAAGACAGGCAAAATCTGTATGCAATCCCTCGTCTCTAGATATA 22102 Query 36197 AATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAC 36256 | |||||| ||||| ||||| |||||||| || ||||| || || | ||| |||||||| Sbjct 22101 AGTTCGTTTGAAAAGGTGAGACCGGGCATGAGTCCACGTTTCTTTAACCAGAATATGGAA 22042 Query 36257 GCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC 36315 |||||||| || |||||||| || || || || || ||||||||||||| || ||||| Sbjct 22041 GCAAATGACCCTGAAAAGAAGATGCCCTCGACGGCAGCAAAGGCAATAATTCGATCTCC 21983 Score = 138 bits (152), Expect = 1e-27 Identities = 216/306 (71%), Gaps = 5/306 (2%) Strand=Plus/Minus Query 36449 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 36508 |||||||| || |||||||| || || || |||||||| |||||||||||||| ||||| Sbjct 21775 TACATTTCGGAGTGAATGTTCTCGATTGCAATTTGAAACCCGTAGAAACATCTCGCCTCC 21716 Query 36509 GTAATCTGTACTT-CTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 36567 |||| |||||||| |||| ||||| || | | || || ||||| |||||||| Sbjct 21715 GTAACCTGTACTTCCTGT-GTAAATCTCTCCACAATGTTCTCGTTCACAATTCCGTCCGA 21657 Query 36568 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTT--- 36624 || || ||||| ||||| || || |||||| || ||| | | | ||| Sbjct 21656 CGCAGCGAAAAATGCCAAAACTCGTGATATAAAGTACCGTTCCTCATCATTCAATTTCTC 21597 Query 36625 ATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTC 36684 | ||| || | | || || | |||||||| ||||| |||||||| ||| | Sbjct 21596 CTCCCAGTCGATCAAGTCCTTGCTGAGGTCCACTTCCTCCACAGTCCAAAAGCTTGCTAC 21537 Query 36685 TGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATT 36744 ||||| |||||||| ||||| || ||| ||||| || |||| || || |||||||| Sbjct 21536 GGCCTTCTTATACATGTTCCAAATATCAAAATATTCGATAGGAAGGATTACGAATCTATT 21477 Query 36745 TTGATT 36750 |||| Sbjct 21476 AGGATT 21471 >seq4608 Length=17199 Score = 96.9 bits (106), Expect = 5e-15 Identities = 161/229 (70%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 158973 GAAGGATTGGTCTTAAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATGGTTA 159032 ||||||||||| | |||||||| ||| || || ||||| ||| || ||| | Sbjct 12424 GAAGGATTGGTACTCAAAGATATCAATTCTACTTATGAGCCGGGGAAGCGACATTGGCTT 12365 Query 159033 AAAATAAAGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAGTA 159092 || | || ||| |||||||| || || | ||||||||| |||| || || || || Sbjct 12364 AAGGTCAAAAAAGATTATTTGAATGATGGGGCAATGGCAGATACTGCTGACTTGGTTGTT 12305 Query 159093 CTAGGTGCTTACTATGGTAAAGGATCAAAGGGTGGTATTATG-GCAGTCTTTTTAATGGG 159151 | |||| | | ||||| |||| ||||||||| || || ||| | ||||| ||||| Sbjct 12304 TTGGGTGGATGGTTTGGTACAGGACAAAAGGGTGGGATCGTGAGCA-TATTTTTGATGGG 12246 Query 159152 TTGTTACGATGATGAATCCGGTAAATGGAAGACGGTAACTAAATGTTCA 159200 ||| |||||| | || ||||||| ||| ||||| ||| ||||| Sbjct 12245 TTGCTACGATACCTCAACCAAAAAATGGATGACTGTAAC-AAAGGTTCA 12198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657488588238600