Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq58440 241 2e-58 seq27661 199 6e-46 seq4608 89.7 7e-13 >seq58440 Length=15377 Score = 241 bits (266), Expect = 2e-58 Identities = 460/676 (68%), Gaps = 10/676 (1%) Strand=Plus/Minus Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768 ||||||| |||||| ||||||| | | || | ||| ||||| ||||| ||||| || Sbjct 6368 TTGTCCACTGTGAACTGAATGGCACTAGCCGCTGCTTTGGTACGAAGATAATACATCCCT 6309 Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828 ||||| | ||||| |||| |||||||||||||| || ||||| || | || Sbjct 6308 GTTTTCAATCCGAGTTTCCAACCGTAGAAATGCATGGATGTAAGTTTTCCGTAGTTAGGC 6249 Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888 | ||| ||||| || |||| |||||||||||||| || || || || | || |||||| Sbjct 6248 TGTGCGATATGTATGTTCAAGGATTGACTTTGATCAATAAAAGCCCCGCGATCAGCAGCC 6189 Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 78948 |||| | || ||||||||| | ||||||||| | |||||||||| ||||||||| Sbjct 6188 ATTTGAAGGACCGTCTTTTGAGAAATTTCCCAGACTGTTTTATAAAGCTTCTTAATATCG 6129 Query 78949 TCTGGAAGGTTTG-----TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA 79003 || |||| |||| |||| || | ||||||| ||| || ||||| | | || | Sbjct 6128 TCAGGAA--TTTGAGGAATATTTTGTACGGATCCATTATCCGCAATAATATTTTGTTTCA 6071 Query 79004 TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 79063 | || |||| ||| | | | || || || |||| | | ||| |||| || | || Sbjct 6070 TTTCGTCATCCCAAAGATCCATATCAGTCAAGTCTCTCAATAAATGTTGATTCACAATTT 6011 Query 79064 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATT 79123 ||||||| || || || || | | | ||||||||| || |||| || | || Sbjct 6010 GAAATTCACCGGATAAGACGCGTCTGGAGTAAATATTTGATGTGTATGCCTCAATTCCTT 5951 Query 79124 CATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTAT 79183 |||| || || | ||||| || || || || |||||||| || || | | | || Sbjct 5950 CATTGTTACCTAGTATTTGGGCCGTGGAGGCGGTTGGCATGGGAGCAAGAAGAAGGGAAT 5891 Query 79184 TTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACG 79243 | | | |||| | ||||| | |||| | ||||||||| | || | | Sbjct 5890 TCCGTACTCCGTCTTTAGCAATTTTTGCCTTTAATTTTGACCAATCCCACATATTTGTGG 5831 Query 79244 GG---ACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGT 79300 || ||| | | |||||||||| ||||||| | || | ||| | |||||| | | Sbjct 5830 GGGTAACACCTTCCCAAAGATCAAATTGTAGCAACCCTTGACTTACTGGAGATCCTTTAT 5771 Query 79301 ATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAAT 79360 |||| || || | ||| | | |||| |||||||||||| ||||| || ||||| | Sbjct 5770 ATGTCTCGTATGTTCCCAATTCAGCAGCTAGTTCACAACTCGCTTCTAAGGCACCGTAGT 5711 Query 79361 AAATGGTTTCGAAAAT 79376 |||| ||||| || || Sbjct 5710 AAATAGTTTCAAATAT 5695 Score = 215 bits (238), Expect = 7e-51 Identities = 582/881 (66%), Gaps = 7/881 (1%) Strand=Plus/Minus Query 79659 ATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATT 79718 ||||| || |||||| || || | ||| || || || ||||| || || | |||||| Sbjct 5280 ATATTCTACTATTTCGGTACATAAATTAGAGCATTTTATAGTTCCCAAGTTCTTTTGATT 5221 Query 79719 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGA 79778 | || || || | ||||| || | ||| | ||||| ||||||||||| || || Sbjct 5220 AGATTTCCGATTGCAAGAGTCCTTGTATAACATGTAGGGAGTCCCAGTTTCAATTTGCGA 5161 Query 79779 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCT 79838 ||| || || || | ||| || |||| || | || || | ||||| Sbjct 5160 TTCAATGATGGCCTCCCACACTTTATGAGCAGGTACCTGCCGCCTGAATTTGTTTTCATC 5101 Query 79839 TTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACA 79898 || |||| ||||| | || || || || ||||||||||| ||||| || ||||| Sbjct 5100 CTCATATTTAAGATATAGTTTCTCAAAATCTTCACCCCAAACATCATCTAACCCTGGACA 5041 Query 79899 TTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATC 79958 ||| | ||||||||| | ||| ||||| || | ||||||||||| || | ||| Sbjct 5040 TTCATGAGGACACATAAGGCTCCAAATACCATCCTCTTCCACTCGTTTCATGAATAAATC 4981 Query 79959 AGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCT 80017 ||||||||||||||| ||| |||| ||| || | || ||||| || || ||||| | Sbjct 4980 AGGAATCCAAAGAGC-ATAGAATAAATCCCTTGCCCTTTGCTCTTCAGCCCCCGTATTTT 4922 Query 80018 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 80077 | || || || || | | || ||| | |||||| ||||| || || || || | Sbjct 4921 TACGTAGTTCTAGAAAATCAAAAACATCCGCATGCCAAGGTTCTAAATAAATTGCAAATG 4862 Query 80078 CTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 80137 | || || | |||||| || || || || | ||| | || || |||||| |||||| | Sbjct 4861 CGCCAGGCCTTTTGTTACCACCTTGGTCAACATATTTCGCCGTATTATTAAAAACTCGAA 4802 Query 80138 ACATTGGAATAATACCATTGGATGTA-CCATTGGTCCCGGAGATATAGCTTCCACTGGCA 80196 ||| || | ||| ||||| || ||| ||||||||||| | ||||| || | || Sbjct 4801 GCATGGGTACAATCCCATTAGA-GTATCCATTGGTCCCCGCAATATAAGAACCTTTTGCT 4743 Query 80197 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 80256 |||||| | ||| | ||| || || || || ||| || || | ||| | || Sbjct 4742 CGAATACAATGAATATTAATACCGATCCCTCCAGCGGATTTTGAAATAATTGCAGTTTGT 4683 Query 80257 TTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCAT-GTTAAGTAGAAAACAGCT 80315 || | |||||||| ||||| || ||| ||| ||| ||||| || ||| ||||| Sbjct 4682 TTCAGAGTATCATAAATGCCTTCAATGGAGTCAGAGGACATCGTTAA-TAAAAAGCAGCT 4624 Query 80316 AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 80375 || | ||| | || | ||||| || | || ||||| || || || || | Sbjct 4623 TGATAATTGAGGTTTTGGTGTAGCAGCATTGAAAAGTGTGGGAGAGGCATGTGTGAAATA 4564 Query 80376 TTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCC 80435 || ||| || || ||||| |||| || | ||| ||||| | ||||| || Sbjct 4563 CCCTTGAGAGAGAAGGTTGTAGGTCTTGATCACACCTTCAATATCTTCTCCGTGAATACC 4504 Query 80436 TACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAA 80495 ||| | ||| | ||| | ||| || || || |||||||| | || || ||||| | Sbjct 4503 TACAGAGACTCTCATCAGCATATGTTGTGGCCTTTCAACCACTTTTTTGCCAATTTTGAG 4444 Query 80496 CAAGTAAGATTTTTCCAAAGTTTTAAAAC-CAAAATAGTTG 80535 ||||| | ||| | |||||| || | |||| ||||| Sbjct 4443 TAAGTAGCTTCGTTCTAGAGTTTTGAACCTGAAAAGAGTTG 4403 >seq27661 Length=34041 Score = 199 bits (220), Expect = 6e-46 Identities = 335/478 (70%), Gaps = 19/478 (4%) Strand=Plus/Minus Query 49649 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTT 49708 |||| |||||||| ||| ||||| ||||| || || |||||| |||||||| |||| Sbjct 22450 CTTG-GACATAACACCCGCCTTTTGATATTCCCCAACCTTTTTTTCAAAAAAATTGGTTT 22392 Query 49709 TTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTA--TAAAtttt 49766 | || || | ||| ||||||||||| |||||||| ||||| | ||| |||||||| Sbjct 22391 TACCATCAAGTGAAATATTTTCCATAAAATCAAAGGGATTCTCAG--TTAGGTAAATTTT 22334 Query 49767 tttAAATCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCAT 49826 | | | || || | |||||| || ||||||| |||||| | || ||| Sbjct 22333 CGGACAATTAAGCTCTACAAGAAGTCTATCTGCAACAAATTTAATATAT---TGCACCAT 22277 Query 49827 T---TCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTC 49883 ||||| |||||||| | | | ||| || || ||| |||| |||||||| ||| Sbjct 22276 GGAATCACAGTTCATTCCCAACATTCGAACGGGGAGTGCCTCAGTTAGAAATTCACTTTC 22217 Query 49884 AATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGG-TGG---ATGCA 49939 ||| | || || || ||||| || | | | ||| ||| ||| Sbjct 22216 AATCGCAACAGCCTCACGAATAATTTCGACAA----TACGAGCCACGGATGGCTTATGAG 22161 Query 49940 ATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTA 49999 | ||| ||||||| | ||| || ||||| |||| |||||||||||| || | Sbjct 22160 CAAGGTGTCTAAACATAAGACAGGCAAAATCTGTATGCAATCCCTCGTCTCTAGATATAA 22101 Query 50000 GTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACG 50059 ||||||| ||||| ||||| |||||||| || ||||| || || | ||| |||||||| | Sbjct 22100 GTTCGTTTGAAAAGGTGAGACCGGGCATGAGTCCACGTTTCTTTAACCAGAATATGGAAG 22041 Query 50060 CAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC 50117 |||||||||| ||||||||||| || || || || |||||||||| || || ||||| Sbjct 22040 CAAATGACCCTGAAAAGAAGATGCCCTCGACGGCAGCAAAGGCAATAATTCGATCTCC 21983 Score = 123 bits (136), Expect = 4e-23 Identities = 213/306 (70%), Gaps = 5/306 (2%) Strand=Plus/Minus Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 |||||||| || |||||||| || || || || ||||| |||||||||||||| ||||| Sbjct 21775 TACATTTCGGAGTGAATGTTCTCGATTGCAATTTGAAACCCGTAGAAACATCTCGCCTCC 21716 Query 50311 GTAATCTGCACTT-CTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACT 50369 |||| ||| |||| |||| ||||| || | | || || ||||| |||||||| Sbjct 21715 GTAACCTGTACTTCCTGT-GTAAATCTCTCCACAATGTTCTCGTTCACAATTCCGTCCGA 21657 Query 50370 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTT--- 50426 || || ||||| ||||| || || |||||| | ||| | | | ||| Sbjct 21656 CGCAGCGAAAAATGCCAAAACTCGTGATATAAAGTACCGTTCCTCATCATTCAATTTCTC 21597 Query 50427 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTC 50486 | ||| || | | || || | || ||||| ||||| |||||||| ||| | Sbjct 21596 CTCCCAGTCGATCAAGTCCTTGCTGAGGTCCACTTCCTCCACAGTCCAAAAGCTTGCTAC 21537 Query 50487 TGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATT 50546 ||||| |||||||| ||||| || ||| ||||| ||| || | || || |||||||| Sbjct 21536 GGCCTTCTTATACATGTTCCAAATATCAAAATATTCGATAGGAAGGATTACGAATCTATT 21477 Query 50547 TGGAtt 50552 ||||| Sbjct 21476 AGGATT 21471 >seq4608 Length=17199 Score = 89.7 bits (98), Expect = 7e-13 Identities = 159/228 (70%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 174221 GAAGGATTGGTCTTAAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATGGTTA 174280 ||||||||||| | |||||||| ||| || || ||||| ||| || ||| | Sbjct 12424 GAAGGATTGGTACTCAAAGATATCAATTCTACTTATGAGCCGGGGAAGCGACATTGGCTT 12365 Query 174281 AAAATAAAGCGAGACTATTTGAACGAGGGTTCTATGGCAGATTCTGCAGATTTAGTAGTA 174340 || | || ||| |||||||| || || | ||||||||| |||| || || || || Sbjct 12364 AAGGTCAAAAAAGATTATTTGAATGATGGGGCAATGGCAGATACTGCTGACTTGGTTGTT 12305 Query 174341 CTAGGTGCTTACTATGGTAAAGGAGCAAAGGGTGGTATCATG-GCAGTCTTTCTAATGGG 174399 | |||| | | ||||| |||| ||||||||| ||| || ||| | ||| | ||||| Sbjct 12304 TTGGGTGGATGGTTTGGTACAGGACAAAAGGGTGGGATCGTGAGCA-TATTTTTGATGGG 12246 Query 174400 TTGTTACGACGATGAATCCGGTAAATGGAAGACGGTAACTAAATGTTC 174447 ||| ||||| | || ||||||| ||| ||||| ||| |||| Sbjct 12245 TTGCTACGATACCTCAACCAAAAAATGGATGACTGTAAC-AAAGGTTC 12199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717522114690600