Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq27661 230 2e-55 >seq27661 Length=34041 Score = 230 bits (254), Expect = 2e-55 Identities = 339/478 (71%), Gaps = 4/478 (1%) Strand=Plus/Minus Query 13563 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTA 13622 || || ||||| ||| ||||||||||| | ||| |||||||||| || || |||||| Sbjct 22449 TTGGACATAACACCCGCCTTTTGATATTCCCCAACCTTTTTTTCAAAAAAATTGGTTTTA 22390 Query 13623 CCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTT--ATTGACATAAACACTTTAT 13680 || || ||||| |||||||||||||||||||| ||||| | | | |||| ||| Sbjct 22389 CCATCAAGTGAAATATTTTCCATAAAATCAAAGGGATTCTCAGTTAGGTAAAT--TTTCG 22332 Query 13681 CACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAAT 13740 |||| || |||| || | |||||| |||| ||| | ||||||||| ||| ||| Sbjct 22331 GACAATTAAGCTCTACAAGAAGTCTATCTGCAACAAATTTAATATATTGCACCATGGAAT 22272 Query 13741 CACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAG 13800 |||| ||||| || | | | || || | | | |||| |||||| |||| || | Sbjct 22271 CACAGTTCATTCCCAACATTCGAACGGGGAGTGCCTCAGTTAGAAATTCACTTTCAATCG 22212 Query 13801 ACACAGCCTCTTTTATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTT 13860 |||||||| ||||| |||| | || || || || ||| Sbjct 22211 CAACAGCCTCACGAATAATTTCGACAATACGAGCCACGGATGGCTTATGAGCAAGGTGTC 22152 Query 13861 TAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTG 13920 |||| || | ||| |||||||| ||| | ||||| |||||| ||||||||||||| Sbjct 22151 TAAACATAAGACAGGCAAAATCTGTATGCAATCCCTCGTCTCTAGATATAAGTTCGTTTG 22092 Query 13921 AAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACC 13980 |||| || | || ||||| | ||| ||||| |||||||| ||||| | ||||||||||| Sbjct 22091 AAAAGGTGAGACCGGGCATGAGTCCACGTTTCTTTAACCAGAATATGGAAGCAAATGACC 22032 Query 13981 CGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGC 14038 | |||||||| || ||||| || |||||||| || || | ||| ||||| || || || Sbjct 22031 CTGAAAAGAAGATGCCCTCGACGGCAGCAAAGGCAATAATTCGATCTCCGAAGGAGGC 21974 Score = 113 bits (124), Expect = 4e-20 Identities = 222/323 (69%), Gaps = 9/323 (3%) Strand=Plus/Minus Query 14142 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14201 ||||| || || |||||||| |||||||| ||||| ||||| || || || || ||| Sbjct 21799 ATGTAAGTGTCTATAAGTAATGAGTACATTTCGGAGTGAATGTTCTCGATTGCAATTTGA 21740 Query 14202 AAACCATAAAAGCATCTAGCTTCCG--ACCATTGTACTTCC-GAGTAAAATCTTTCGGCC 14258 || || || || ||||| || |||| ||| ||||||||| | ||||| ||| || | Sbjct 21739 AACCCGTAGAAACATCTCGCCTCCGTAACC--TGTACTTCCTGTGTAAA-TCTCTCCACA 21683 Query 14259 AAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAG 14318 | || || || || || || || || || ||||||||||| | | |||||| Sbjct 21682 ATGTTCTCGTTCACAATTCCGTCCGACGCAGCGAAAAATGCCAAAACTCGTGATATAAAG 21623 Query 14319 TATTGCTCTTCATTGTTGAGTTT---TTTCCAATCGGATAAATCCTTAGAAAGATCTACT 14375 || | || |||| || | ||| | ||| ||| || ||||| || || ||| Sbjct 21622 TACCGTTCCTCATCATTCAATTTCTCCTCCCAGTCGATCAAGTCCTTGCTGAGGTCCACT 21563 Query 14376 TCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATAT 14435 || || || |||||||| || || || || || |||||||| ||| || || |||| Sbjct 21562 TCCTCCACAGTCCAAAAGCTTGCTACGGCCTTCTTATACATGTTCCAAATATCAAAATAT 21503 Query 14436 AATATAGGAAAAACTACAAATCT 14458 ||||||| | ||| ||||| Sbjct 21502 TCGATAGGAAGGATTACGAATCT 21480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479229292761000