Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq27661 221 1e-52 >seq27661 Length=34041 Score = 221 bits (244), Expect = 1e-52 Identities = 342/483 (71%), Gaps = 14/483 (3%) Strand=Plus/Minus Query 13351 TTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTA 13410 || || ||||| ||| ||||||||||| | ||| ||||||||||||| || |||||| Sbjct 22449 TTGGACATAACACCCGCCTTTTGATATTCCCCAACCTTTTTTTCAAAAAAATTGGTTTTA 22390 Query 13411 CCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTT---GTTGACATAAACACTTTA 13467 || || ||||| ||||||||||||||||| || ||||| ||| | |||| ||| Sbjct 22389 CCATCAAGTGAAATATTTTCCATAAAATCAAAGGGATTCTCAGTT-AGGTAAAT--TTTC 22333 Query 13468 TCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAA 13527 |||| || |||| | | |||||| |||| ||| | ||||||||| ||| || Sbjct 22332 GGACAATTAAGCTCTACAAGAAGTCTATCTGCAACAAATTTAATATATTGCACCATGGAA 22273 Query 13528 TCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATA 13587 ||||| ||||| || | | | || || | | | ||||| |||||| |||| || Sbjct 22272 TCACAGTTCATTCCCAACATTCGAACGGGGAGTGCCTCAGTTAGAAATTCACTTTCAATC 22213 Query 13588 GACACAGCCTCGTTTATAATAATCTTAATAAT----GTCATTAGAAGGAGGATATTTTAG 13643 | |||||||| |||||| | | ||| | || || || || || Sbjct 22212 GCAACAGCCTCACG---AATAATTTCGACAATACGAGCCACG-GATGGCTTATGAGCAAG 22157 Query 13644 ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTC 13703 ||| |||| || | ||| |||||||| ||| | ||||| |||||| |||||||| Sbjct 22156 GTGTCTAAACATAAGACAGGCAAAATCTGTATGCAATCCCTCGTCTCTAGATATAAGTTC 22097 Query 13704 GTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAA 13763 ||||||||| || | || ||||| | ||| ||||| |||||||| ||||| | ||| || Sbjct 22096 GTTTGAAAAGGTGAGACCGGGCATGAGTCCACGTTTCTTTAACCAGAATATGGAAGCAAA 22037 Query 13764 TGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGA 13823 ||| || |||||||| || ||||| || |||||||| || || | ||| ||||| || || Sbjct 22036 TGACCCTGAAAAGAAGATGCCCTCGACGGCAGCAAAGGCAATAATTCGATCTCCGAAGGA 21977 Query 13824 TGC 13826 || Sbjct 21976 GGC 21974 Score = 118 bits (130), Expect = 1e-21 Identities = 223/323 (69%), Gaps = 9/323 (3%) Strand=Plus/Minus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 ||||| || || |||||||| |||||||| ||||| ||||| || || || || ||| Sbjct 21799 ATGTAAGTGTCTATAAGTAATGAGTACATTTCGGAGTGAATGTTCTCGATTGCAATTTGA 21740 Query 13990 AAACCATAAAAACATCTAGCTTCTG--ACCATTGTACCTCC-GAGTAAAATCTTTCTGCC 14046 || || || |||||||| || || | ||| ||||| ||| | ||||| ||| || | Sbjct 21739 AACCCGTAGAAACATCTCGCCTCCGTAACC--TGTACTTCCTGTGTAAA-TCTCTCCACA 21683 Query 14047 AAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAG 14106 | ||| || || ||||| || || || || ||||||||||| | | |||||| Sbjct 21682 ATGTTCTCGTTCACAATTCCGTCCGACGCAGCGAAAAATGCCAAAACTCGTGATATAAAG 21623 Query 14107 TATTGCTCTTCATTGTTGAGTTT---TTTCCAATCGGCTAAATCCTTAGAAAGATCTACT 14163 || | || |||| || | ||| | ||| ||| || ||||| || || ||| Sbjct 21622 TACCGTTCCTCATCATTCAATTTCTCCTCCCAGTCGATCAAGTCCTTGCTGAGGTCCACT 21563 Query 14164 TCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATAT 14223 || || || |||||||| || || || || || |||||||| ||| || || |||| Sbjct 21562 TCCTCCACAGTCCAAAAGCTTGCTACGGCCTTCTTATACATGTTCCAAATATCAAAATAT 21503 Query 14224 AATATAGGAAAAACTACAAATCT 14246 ||||||| | ||| ||||| Sbjct 21502 TCGATAGGAAGGATTACGAATCT 21480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478091277030600