Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq42503 120 2e-22 seq20317 116 3e-21 seq66674 114 1e-20 >seq42503 Length=950 Score = 120 bits (132), Expect = 2e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || ||| || || ||||| | |||| |||||||| | ||| ||||| || Sbjct 640 CCTCCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAA 699 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | | || ||||||||||| || ||||| || || || |||||||| | || Sbjct 700 AGNGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGA 759 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| |||| || | ||| |||||| ||| ||||| Sbjct 760 ATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACT 819 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| ||||||| || || ||||| ||||||||| Sbjct 820 TCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCATT 867 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || ||| | || || || | ||| ||||||||| | || ||||| || Sbjct 184 CCTCCTCTCAATCTGAGGACTAAGTGAAGGGTGGACTCCTTTTGGATGTTATAATCTGAA 243 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | | || || |||||||| || ||||| ||||| || ||||| || | || Sbjct 244 AGTGTTCTTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGA 303 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || || | || || | ||| || || ||| ||||| Sbjct 304 ATACCTTCCTTATCTTGAATTTTAGCCTTAACATTCTCAATAGTATCAGAAGCTTCGACT 363 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || |||||||| || |||| || || ||||||||||||||| Sbjct 364 TCAAGAGTGATAGTTTTACCAGTTAAGGTCTTGACAAAAATTTGCATT 411 Score = 86.0 bits (94), Expect = 5e-12 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 42931 TTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGT 42990 || || || || || |||||| | || || |||||||| || ||||||||||||| ||| Sbjct 4 TTATAGTCTGATAAAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATCAATCTCTGC 63 Query 42991 TGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCG 43050 ||||| | || | ||||| || || ||| | ||||| | ||| || || Sbjct 64 TGATCTGGAGGAATTCCTTCCTTATCTTGGATTTTAGCCTTGACATTCTCAATAGTATCA 123 Query 43051 CCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||| ||||| || | || |||||||| || |||| || || |||||||| ||||| Sbjct 124 GAAGCTTCGACTTCAAGAGTGATAGTTTTACCAGTTAAGGTCTTGACAAAAATYTGCAT 182 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || ||| | ||||| || | || |||||| || | |||||||||||| Sbjct 412 CCTCCTCTCAATCTGAGAACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCGGAA 471 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | | || || ||||| ||||| ||||| ||||||| || ||||| | || Sbjct 472 AGAGTTCTTCCATCTTCTAATTGCTTGCCAGCAAATATCAATCTTTGCTGATCTGGAGGA 531 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || || | ||||| | ||| ||||| || || || Sbjct 532 ATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATGGTGTCTGAGGCTTCAACT 591 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || |||||||| || || ||||| || ||||| |||||| Sbjct 592 TCAAGTGTGATGGTTTTTCCAGTGAGGGTTTTAACGAAAATCTGCATT 639 >seq20317 Length=5186 Score = 116 bits (128), Expect = 3e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || ||| | |||||||| | || ||||||||| | || || || || Sbjct 217 CCTCCTCTCAATCTAAGGACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAGTCTGAT 276 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || |||||| | || || |||||||| || ||||||||||||| ||| ||||| | || Sbjct 277 AAAGTACGTCCATCTTCTAATTGTTTRCCAGCAAAAATCAATCTCTGCTGATCTGGAGGA 336 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || ||| | ||||| | ||| ||||| ||| || || Sbjct 337 ATTCCTTCCTTATCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCTGAAGCTTCCACT 396 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || |||||||| || |||||||| |||||||| |||||| Sbjct 397 TCAAGAGTGATTGTTTTTCCAGTGAGAGTTTTAACAAAAATCTGCATT 444 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || || | || || |||| |||| |||||||| | ||||| |||||| Sbjct 673 CCTCCTCTCAACCTCAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAC 732 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||||||| | || |||||||| || || ||||| ||||| || || ||||| | || Sbjct 733 AATGTACGTCCATCCTCCAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGGG 792 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| ||||| | ||| ||||| ||| || || Sbjct 793 ATTCCTTCCTTATCCTGGATCTTGGTCTTGACATTTTCAATCGTGTCTGAAGCTTCCACT 852 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| || || |||||||||||||| |||||||| Sbjct 853 TCAAGTGTGATGGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCAT 899 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42895 CTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCG 42954 || || || ||||| | |||| |||||||| | ||| ||||| || | || | | | Sbjct 1 CTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAAAGAGTTCTTCCA 60 Query 42955 TCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTT 43014 || ||||||||||| || ||||| || || || |||||||| | || | |||||| || Sbjct 61 TCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTA 120 Query 43015 TCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATA 43074 || |||| |||| || | ||| |||||| ||| ||||| || | || || Sbjct 121 TCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACTTCAAGAGTGATT 180 Query 43075 GTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 ||||| ||||||| || || ||||| ||||||||| Sbjct 181 GTTTTACCGGTTAAGGTCTTAACAAAGATTTGCATT 216 >seq66674 Length=28361 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| || || ||||| | |||| |||||||| | ||| ||||| || Sbjct 27877 CCACCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAA 27936 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | | || ||||||||||| || ||||| || || || |||||||| | || Sbjct 27937 AGGGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGA 27996 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| |||| || | ||| |||||| ||| ||||| Sbjct 27997 ATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACT 28056 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| ||||||| || || ||||| ||||||||| Sbjct 28057 TCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCATT 28104 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || |||||| || ||||| | ||| |||||||| | || ||||| || Sbjct 27649 CCACCTCTCAATCTTAAAACTAAATGAAGAGTAGATTCCTTTTGAATGTTATAATCTGAA 27708 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | | || ||||||||||| || ||||| || || || |||||||| | || Sbjct 27709 AGCGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGA 27768 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || || |||| || | ||| || || ||| ||||| Sbjct 27769 ATACCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGCTTCGACT 27828 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| || || || ||||| ||||| ||||||||| Sbjct 27829 TCAAGAGTGATTGTTTTACCAGTAAGGGTTTTGACAAAGATTTGCATT 27876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380983053903570