Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq58440 206 4e-48 seq27661 176 6e-39 seq4608 89.7 7e-13 >seq58440 Length=15377 Score = 206 bits (228), Expect = 4e-48 Identities = 326/466 (70%), Gaps = 7/466 (2%) Strand=Plus/Minus Query 70792 TTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCT 70851 ||||||| ||| |||||||||| | | || ||||| ||||| ||||| ||||| ||| Sbjct 6368 TTGTCCACTGTGAACTGAATGGCACTAGCCGCTGCTTTGGTACGAAGATAATACATCCCT 6309 Query 70852 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGA 70911 ||||| | ||||| |||| ||||| |||||||| || ||||| ||| |||| Sbjct 6308 GTTTTCAATCCGAGTTTCCAACCGTAGAAATGCATGGATGTAAGTTTTCCGTAGTTAGGC 6249 Query 70912 TCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 70971 | || || || || |||| || ||||||||||| || || || || | || |||||| Sbjct 6248 TGTGCGATATGTATGTTCAAGGATTGACTTTGATCAATAAAAGCCCCGCGATCAGCAGCC 6189 Query 70972 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCT 71031 |||| | || ||||||||| | ||||||||| | |||||||||| ||||||||| Sbjct 6188 ATTTGAAGGACCGTCTTTTGAGAAATTTCCCAGACTGTTTTATAAAGCTTCTTAATATCG 6129 Query 71032 TCTGGAAGGTTTG-----TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGA 71086 || |||| |||| |||| || | ||||||| ||| |||||||| | | ||| | Sbjct 6128 TCAGGAA--TTTGAGGAATATTTTGTACGGATCCATTATCCGCAATAATATTTTGTTTCA 6071 Query 71087 TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTT 71146 | || |||| ||| | | | || || || |||| | | ||| |||| || | || Sbjct 6070 TTTCGTCATCCCAAAGATCCATATCAGTCAAGTCTCTCAATAAATGTTGATTCACAATTT 6011 Query 71147 GAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACT 71206 ||||||| || || || || | | | ||||||||| || || | || | | | Sbjct 6010 GAAATTCACCGGATAAGACGCGTCTGGAGTAAATATTTGATGTGTATGCCTCAATTCCTT 5951 Query 71207 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGC 71252 |||| || || | ||||| || || || || || ||||| || || Sbjct 5950 CATTGTTACCTAGTATTTGGGCCGTGGAGGCGGTTGGCATGGGAGC 5905 Score = 201 bits (222), Expect = 2e-46 Identities = 579/882 (66%), Gaps = 9/882 (1%) Strand=Plus/Minus Query 71742 ATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 71801 ||||| || ||||| || || | |||| || || || ||||| || || | |||||| Sbjct 5280 ATATTCTACTATTTCGGTACATAAATTAGAGCATTTTATAGTTCCCAAGTTCTTTTGATT 5221 Query 71802 ACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 71861 | || || || | ||||| || | || | ||||| ||||||||||| || || Sbjct 5220 AGATTTCCGATTGCAAGAGTCCTTGTATAACATGTAGGGAGTCCCAGTTTCAATTTGCGA 5161 Query 71862 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCT 71921 ||| || || || | ||| || |||| || | || || | ||||| Sbjct 5160 TTCAATGATGGCCTCCCACACTTTATGAGCAGGTACCTGCCGCCTGAATTTGTTTTCATC 5101 Query 71922 TTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACA 71981 || |||| ||||| | || || || || |||||| ||| ||||| || ||||| Sbjct 5100 CTCATATTTAAGATATAGTTTCTCAAAATCTTCACCCCAAACATCATCTAACCCTGGACA 5041 Query 71982 TTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATC 72041 ||||| |||||||| | ||| ||||| || | ||||||||||| || | ||| Sbjct 5040 TTCATGAGGACACATAAGGCTCCAAATACCATCCTCTTCCACTCGTTTCATGAATAAATC 4981 Query 72042 AGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCT 72100 ||||||||||||||| ||| |||| ||| || | || ||||| || || ||||| | Sbjct 4980 AGGAATCCAAAGAGC-ATAGAATAAATCCCTTGCCCTTTGCTCTTCAGCCCCCGTATTTT 4922 Query 72101 TTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA 72160 | || || || || | | || ||| | |||||| ||||| || || || || | Sbjct 4921 TACGTAGTTCTAGAAAATCAAAAACATCCGCATGCCAAGGTTCTAAATAAATTGCAAATG 4862 Query 72161 CTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 72220 | || |||| |||||| || || || || | ||| | || || |||||| |||||| | Sbjct 4861 CGCCAGGCCTTTTGTTACCACCTTGGTCAACATATTTCGCCGTATTATTAAAAACTCGAA 4802 Query 72221 ACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCAC 72280 ||| || | ||| ||||| || ||||||||||| | ||||| || | || | Sbjct 4801 GCATGGGTACAATCCCATTAGAGTATCCATTGGTCCCCGCAATATAAGAACCTTTTGCTC 4742 Query 72281 GAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCG 72338 |||| | || ||| || ||| || || || || ||| || || | ||| | | Sbjct 4741 GAATACAATGAATATTAAT--ACCGATCCCTCCAGCGGATTTTGAAATAATTGCAGTTTG 4684 Query 72339 TTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGC 72397 ||| | |||||||| ||||| || || ||| ||| ||||| || ||| |||| Sbjct 4683 TTTCAGAGTATCATAAATGCCTTCAATGGAGTCAGAGGACATCGTTAA-TAAAAAGCAGC 4625 Query 72398 TAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACC 72457 | || | ||| | || | ||||| || | || ||||| || || || || Sbjct 4624 TTGATAATTGAGGTTTTGGTGTAGCAGCATTGAAAAGTGTGGGAGAGGCATGTGTGAAAT 4565 Query 72458 ATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTC 72517 | || ||| || || ||||| |||| || | ||| ||||| | || || | Sbjct 4564 ACCCTTGAGAGAGAAGGTTGTAGGTCTTGATCACACCTTCAATATCTTCTCCGTGAATAC 4505 Query 72518 CTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCA 72577 |||| | ||| | ||| | |||||| || || |||||||| | || || ||||| | Sbjct 4504 CTACAGAGACTCTCATCAGCATATGTTGTGGCCTTTCAACCACTTTTTTGCCAATTTTGA 4445 Query 72578 ACAAGTAGGATTTTTCCAAAGTTTTAAAAC-CAAAATAGTTG 72618 |||||| | ||| | |||||| || | |||| ||||| Sbjct 4444 GTAAGTAGCTTCGTTCTAGAGTTTTGAACCTGAAAAGAGTTG 4403 >seq27661 Length=34041 Score = 176 bits (194), Expect = 6e-39 Identities = 333/478 (70%), Gaps = 19/478 (4%) Strand=Plus/Minus Query 41754 CTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCT 41813 |||| |||||||| ||| ||||| ||||| || || |||||| |||||||| || | Sbjct 22450 CTTG-GACATAACACCCGCCTTTTGATATTCCCCAACCTTTTTTTCAAAAAAATTGGTTT 22392 Query 41814 TTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTA--TAAAtttt 41871 | || || | ||| ||||||||||| |||||||| ||||| | ||| |||||||| Sbjct 22391 TACCATCAAGTGAAATATTTTCCATAAAATCAAAGGGATTCTCAG--TTAGGTAAATTTT 22334 Query 41872 tttAAATCCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCAT 41931 | | | || || | ||||||||| | |||| |||||| | || ||| Sbjct 22333 CGGACAATTAAGCTCTACAAGAAGTCTATCTGCAACAAATTTAATATAT---TGCACCAT 22277 Query 41932 T---TCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTC 41988 ||||| |||||||| | | | ||| || || ||| |||| |||||||| ||| Sbjct 22276 GGAATCACAGTTCATTCCCAACATTCGAACGGGGAGTGCCTCAGTTAGAAATTCACTTTC 22217 Query 41989 AATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGG-TGGAT-ACAAT 42046 ||| | || || || ||||| || || | | | ||| ||| | | | Sbjct 22216 AATCGCAACAGCCTCACGAATAATT--TCG-ACAATACGAGC-CACGGATGGCTTATGAG 22161 Query 42047 AAA--TGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTA 42104 || ||| ||||||| | ||| || ||||| |||| ||||| |||||| || | Sbjct 22160 CAAGGTGTCTAAACATAAGACAGGCAAAATCTGTATGCAATCCCTCGTCTCTAGATATAA 22101 Query 42105 ATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACG 42164 |||||| ||||| ||||| |||||||| || ||||| || || | ||| ||||| || | Sbjct 22100 GTTCGTTTGAAAAGGTGAGACCGGGCATGAGTCCACGTTTCTTTAACCAGAATATGGAAG 22041 Query 42165 CAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC 42222 ||||||| || ||||||||||| || || || || ||||||||||||| || ||||| Sbjct 22040 CAAATGACCCTGAAAAGAAGATGCCCTCGACGGCAGCAAAGGCAATAATTCGATCTCC 21983 Score = 150 bits (166), Expect = 2e-31 Identities = 219/306 (72%), Gaps = 5/306 (2%) Strand=Plus/Minus Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCG 42415 |||||||| || |||||||| || || || || ||||| |||||||||||||| ||||| Sbjct 21775 TACATTTCGGAGTGAATGTTCTCGATTGCAATTTGAAACCCGTAGAAACATCTCGCCTCC 21716 Query 42416 GTAACCTGTACTT-CTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACT 42474 ||||||||||||| |||| ||||| || | | || |||||||| |||||||| Sbjct 21715 GTAACCTGTACTTCCTGT-GTAAATCTCTCCACAATGTTCTCGTTCACAATTCCGTCCGA 21657 Query 42475 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTT--- 42531 || || ||||| ||||| || || |||||| || ||| || | ||||| Sbjct 21656 CGCAGCGAAAAATGCCAAAACTCGTGATATAAAGTACCGTTCCTCATCATTCAATTTCTC 21597 Query 42532 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTC 42591 | ||| || | | || || | || ||||| || || |||||||| |||| | Sbjct 21596 CTCCCAGTCGATCAAGTCCTTGCTGAGGTCCACTTCCTCCACAGTCCAAAAGCTTGCTAC 21537 Query 42592 TGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATT 42651 ||||| |||||||| ||||| |||||| ||||| || || | || || |||||||| Sbjct 21536 GGCCTTCTTATACATGTTCCAAATATCAAAATATTCGATAGGAAGGATTACGAATCTATT 21477 Query 42652 TGGATT 42657 ||||| Sbjct 21476 AGGATT 21471 >seq4608 Length=17199 Score = 89.7 bits (98), Expect = 7e-13 Identities = 159/228 (70%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 165570 GAAGGATTGGTCTTAAAAGATATTAATGGAGTATACGAACCGGGAAAGAGAAGATGGTTA 165629 ||||||||||| | |||||||| ||| || || ||||| ||| || ||| | Sbjct 12424 GAAGGATTGGTACTCAAAGATATCAATTCTACTTATGAGCCGGGGAAGCGACATTGGCTT 12365 Query 165630 AAAATAAAGCGAGACTATTTGAACGAGGGTTCCATGGCAGATTCTGCCGATTTAGTAGTA 165689 || | || ||| |||||||| || || | ||||||||| |||| || || || || Sbjct 12364 AAGGTCAAAAAAGATTATTTGAATGATGGGGCAATGGCAGATACTGCTGACTTGGTTGTT 12305 Query 165690 CTAGGTGCTTACTATGGTAAAGGAGCAAAGGGTGGTATCATG-GCAGTCTTTCTAATGGG 165748 | |||| | | ||||| |||| ||||||||| ||| || ||| | ||| | ||||| Sbjct 12304 TTGGGTGGATGGTTTGGTACAGGACAAAAGGGTGGGATCGTGAGCA-TATTTTTGATGGG 12246 Query 165749 TTGTTACGACGATGAATCCGGTAAATGGAAGACGGTAACTAAATGTTC 165796 ||| ||||| | || ||||||| ||| ||||| ||| |||| Sbjct 12245 TTGCTACGATACCTCAACCAAAAAATGGATGACTGTAAC-AAAGGTTC 12199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670441508855400