Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq66674 145 8e-30 seq58440 122 9e-23 seq42503 109 6e-19 seq62093 100 3e-16 seq20317 100 3e-16 >seq66674 Length=28361 Score = 145 bits (160), Expect = 8e-30 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGA 143028 |||||||| || |||| |||||||||||||| ||||| |||||| | |||| || | Sbjct 27205 CGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGATAAAGTGCGTCCA 27264 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 ||||| | ||||||||||||| |||||| |||||||||||| ||||| ||||| || || Sbjct 27265 -TCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCCTCCTT 27323 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 ||| |||||| ||| | | || | || || | ||| || ||||||| ||| | Sbjct 27324 GTCTTGAATTTTGGCTTTAACATTCTCAATGGTATCAGAGGGCTCAACTTCAAGAGTGAT 27383 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || || || | |||||| ||||| || |||||| Sbjct 27384 TGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCATA 27420 Score = 116 bits (128), Expect = 4e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTC 143031 ||||||||||| | || || |||||||| ||||| || || | || | || | || Sbjct 27436 AAAACTAAATGCAACGTGGACTCTTTTTGAATGTTATAGTCTGATAAAGTACGTCCA-TC 27494 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 || | ||||||||||||| |||||| |||||||||||| ||||| || ||||||||||| Sbjct 27495 CTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATACCTTCTTTGTC 27554 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 |||||| || | | ||| | || || | | ||| ||||||| ||| | || Sbjct 27555 TTGAATTTTAGCCTTAACATTTTCTATAGTATCAGAAGCTTCAACTTCAAGAGTGATTGT 27614 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || || | |||||| ||||| || ||||| Sbjct 27615 TTTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27647 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCT 143032 ||||||||||||| |||||||| ||||| ||||| ||||| | || || ||| Sbjct 27664 AAAACTAAATGAAGAGTAGATTCCTTTTGAATGTTATAATCTGAAAGCGTTCTTCCATCT 27723 Query 143033 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 143092 || | ||||||||||||| |||| | |||||| ||||| || || || ||||| ||||| Sbjct 27724 TCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCT 27783 Query 143093 GTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTC 143152 |||||| ||| | | ||| | || || | | ||| ||||||| ||| | || Sbjct 27784 TGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGCTTCGACTTCAAGAGTGATTGTT 27843 Query 143153 TTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || || | ||||| || || |||||||| Sbjct 27844 TTACCAGTAAGGGTTTTGACAAAGATTTGCAT 27875 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | ||| |||||||||| || ||||| ||||| || || ||||| Sbjct 27877 CCACCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAA 27936 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||||||||||||| |||| | |||||| ||||| || || Sbjct 27937 AGGGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGA 27996 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || || || ||| | | ||| | ||||| | | ||| ||| Sbjct 27997 ATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACT 28056 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | || || ||||| || || || || || |||||||| Sbjct 28057 TCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCAT 28103 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| | | || | |||| || || || ||||| ||||| ||||| Sbjct 28105 CCTCCTCTTAATCTGAGGACCAGGTGAAGGGTGGACTCCTTTTGGATGTTATAATCTGAA 28164 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || || || | ||||||||||||| |||||| |||||| || || || || Sbjct 28165 AGTGTTCTTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGA 28224 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || |||||| || | | ||| | ||||| | | ||| ||| Sbjct 28225 ATACCTTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATTGTGTCTGAAGCTTCCACT 28284 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | || || || |||| ||||| || || || ||||| Sbjct 28285 TCAAGTGTGATGGTTTTTCCAGTCAGAGTTTTAACAAAAATCTGCAT 28331 >seq58440 Length=15377 Score = 122 bits (134), Expect = 9e-23 Identities = 340/512 (66%), Gaps = 21/512 (4%) Strand=Plus/Minus Query 157084 TTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCC 157143 |||||| || | || ||||| ||||||||| | ||| ||||| ||||||||| ||| Sbjct 5295 TTCGTCAGGAGAGCTATATTCTACTATTTCGGTACATAAATTAGAGCATTTTATAGTTCC 5236 Query 157144 GCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCC 157203 | || ||||||| ||| || ||||||| |||||||||||||||||| || || || Sbjct 5235 CAAGTTCTTTTGATTAGATTTCCGATTGCAAGAGTCCTTGTATAACATGTAGGGAGTCCC 5176 Query 157204 GGTTTCGGCTTGAATTTCTATGATG---TTGCGCA-TTAATGTAACCGCGGGCATTTGCT 157259 ||||| ||| ||| |||||| | | || || ||| || || | ||| Sbjct 5175 AGTTTCAATTTGCGATTCAATGATGGCCTCCCACACTTTATG----AGCAGGTACCTGCC 5120 Query 157260 CGCGAAACTGGCCTTTATCCTCGTAATGTTTGTACCAGTAT-TCAAAGTCATCACCATAC 157318 | || | | || |||||| | || | | ||| | ||||| || ||||| | Sbjct 5119 GCCTGAATTTGTTTTCATCCTCAT-ATTTAAGATATAGTTTCTCAAAATCTTCACCCCAA 5061 Query 157319 GTATCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCA 157378 ||| | | | ||||| || | ||||||||| | ||| ||||| | ||||| Sbjct 5060 ACATCATCTAACCCTGGACATTCATGAGGACACATAAGGCTCCAAATACCATCCTCTTCC 5001 Query 157379 ACGCGTTTCATAAATATATCGGGAACCCATAAAGCGTTCATCAAATCAC--GCGCTTTGG 157436 || |||||||| |||| ||| |||| ||| | ||| | | ||||| | || ||||| Sbjct 5000 ACTCGTTTCATGAATAAATCAGGAATCCAAAGAGCATAGAATAAATCCCTTGCCCTTTG- 4942 Query 157437 TGTCTTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACG 157496 ||||| || | ||| ||| | | || || || | || || |||||| | Sbjct 4941 -CTCTTCAGCCCCCGTATTTTTACGTAGTTCTAGAAAATCAAAAACATCCGCATGCCAAG 4883 Query 157497 GTTCAACGTACACTGC--TTGGGC---TCCTTTTCGCTTGCCACCTTGATCCACGTGACG 157551 |||| | || | ||| || || |||||| || |||||||| || || | Sbjct 4882 GTTCTAAATAAATTGCAAATGCGCCAGGCCTTTT--GTTACCACCTTGGTCAACATATTT 4825 Query 157552 CACCATATTATTAAAAACTCGCAGCATTGGTA 157583 | || |||||||||||||||| ||||| |||| Sbjct 4824 CGCCGTATTATTAAAAACTCGAAGCATGGGTA 4793 >seq42503 Length=950 Score = 109 bits (120), Expect = 6e-19 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || | ||| |||||||||| || ||||| ||||| || || ||||| Sbjct 640 CCTCCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAA 699 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||||||||||||| |||| | |||||| ||||| || || Sbjct 700 AGNGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGA 759 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || || || ||| | | ||| | ||||| | | ||| ||| Sbjct 760 ATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACT 819 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | || || ||||| || || || || || |||||||| Sbjct 820 TCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCAT 866 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || | | ||||| |||| || || || ||||| ||||| ||||| Sbjct 184 CCTCCTCTCAATCTGAGGACTAAGTGAAGGGTGGACTCCTTTTGGATGTTATAATCTGAA 243 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || || || | ||||||||||||| |||||| |||||| || || || || Sbjct 244 AGTGTTCTTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTGGTCTGGGGGA 303 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || |||||| || | | || | || || | | ||| ||| Sbjct 304 ATACCTTCCTTATCTTGAATTTTAGCCTTAACATTCTCAATAGTATCAGAAGCTTCGACT 363 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | || || || || || || || || || |||||||| Sbjct 364 TCAAGAGTGATAGTTTTACCAGTTAAGGTCTTGACAAAAATTTGCAT 410 >seq62093 Length=56387 Score = 100 bits (110), Expect = 3e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 142995 CTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGA 143054 |||| || ||||| ||||| || || || |||||||| || || |||||| ||| Sbjct 3528 CTTTCTGAATGTTATAATCAGACAAAGTCCTTCCATCTTCGAGCTGCTTGCCAGCAAAGA 3587 Query 143055 TCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTT 143114 | |||||||||||||| ||||| || ||||| || || || || || | | || Sbjct 3588 TGAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGGATCTTAGTCTTCACATTTT 3647 Query 143115 CCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGA 143174 | | || || | ||||| || |||| || | |||||||| ||||| ||||| |||| Sbjct 3648 CGATGGTATCTGAAGGTTCGACCTCAAGGGTAATGGTCTTGCCCGTCAAAGTTTTGACGA 3707 Query 143175 ATATTTGCAT 143184 | |||||||| Sbjct 3708 AGATTTGCAT 3717 >seq20317 Length=5186 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| |||||||||| || ||||| ||||| || || ||||| | || || || Sbjct 3 CAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAAAGAGTTCTTCCATC 62 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| | ||||||||||||| |||| | |||||| ||||| || || || ||||| || || Sbjct 63 TTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTATC 122 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 || || ||| | | ||| | ||||| | | ||| ||||||| ||| | || Sbjct 123 TTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACTTCAAGAGTGATTGT 182 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || ||||| || || || || || |||||||| Sbjct 183 TTTACCGGTTAAGGTCTTAACAAAGATTTGCAT 215 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || | || ||||| || | || ||||| ||||| |||||||| ||| | Sbjct 673 CCTCCTCTCAACCTCAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAC 732 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| | || | || || | ||| || |||||| |||||| |||||||||||| || || Sbjct 733 AATGTACGTCCA-TCCTCCAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGG 791 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || || || || | | ||| | |||||| | | ||| || Sbjct 792 GATTCCTTCCTTATCCTGGATCTTGGTCTTGACATTTTCAATCGTGTCTGAAGCTTCCAC 851 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || | || || || || | ||||| || || |||||||| Sbjct 852 TTCAAGTGTGATGGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCAT 899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506487326842800