Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq27661 109 8e-19 seq46208 105 1e-17 seq58440 104 3e-17 seq38453 100 4e-16 >seq27661 Length=34041 Score = 109 bits (120), Expect = 8e-19 Identities = 291/432 (67%), Gaps = 17/432 (4%) Strand=Plus/Plus Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 || || || ||||| ||||||||||||||||| || ||||| |||| || ||| | Sbjct 21998 GCCTTTGCTGCCGTCGAGGGCATCTTCTTTTCAGGGTCATTTGCTTCCATATTCTGGTTA 22057 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 ||||| || |||||||||||||| || || ||||| |||||||| |||||||| Sbjct 22058 AAGAAACGTGGACTCATGCCCGGTCTCACCTTTTCAAACGAACTTATATCTAGAGACGAG 22117 Query 125553 GGCCTACACTGTGACTTTGCCATTCTACTGTTTCG-CAACTATCTGCGTCCCGAGTGCAG 125611 || | || || |||||| ||| ||||| | || || ||| || || Sbjct 22118 GGATTGCATACAGATTTTGCCTGTCTTATGTTTAGACACCT---TGC-TCATAAG---CC 22170 Query 125612 ATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTT 125671 |||| | | | | || | ||| | || || || ||| ||| || || Sbjct 22171 ATCCGTGGCTCGTA---TTGTCGAAATTATTCGTGAGGCTGTTGCGATTGAAAGTGAATT 22227 Query 125672 TCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTG-CAAGCTAATGTGCGAGT 125730 |||||| || | || || || | ||| | || |||||||| | | | |||| | | Sbjct 22228 TCTAACTGAGGCACTCCCCGTTCGAATGTTGGGAATGAACTGTGATTCCATGGTGC-AAT 22286 Query 125731 ACATAGAGTTTGTGGCAGATCGTCTAC-TGTACGAG-TTGATTGGCCGCAAGATTTACAA 125788 | || | ||||| |||||| | || | |||| ||| || |||| ||| || |||||| Sbjct 22287 ATATTAAATTTGTTGCAGATAGACTTCTTGTA-GAGCTTAATTGTCCG-AAAATTTACCT 22344 Query 125789 CGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTT 125848 | |||||||||||||||| ||| | || ||||| || ||||| ||||| ||||| Sbjct 22345 AACTGAGAATCCCTTTGATTTTATGGAAAATATTTCACTTGATGGTAAAACCAATTTTTT 22404 Query 125849 CGAGAAGAAGGT 125860 || || ||||| Sbjct 22405 TGAAAAAAAGGT 22416 Score = 84.2 bits (92), Expect = 3e-11 Identities = 205/308 (67%), Gaps = 2/308 (1%) Strand=Plus/Plus Query 124999 TTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGA 125058 |||| ||| ||| ||| |||||| | ||||| || ||||| || |||||||| Sbjct 21493 TTCCTATCGAATATTTTGATATTTGGAACATGTATAAGAAGGCCGTAGCAAGCTTTTGGA 21552 Query 125059 CGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAA 125118 | || || || || || || ||||||| || ||| |||||| |||| ||| Sbjct 21553 CTGTGGAGGAAGTGGACCTCAGCAAGGACTTGATCGACTGGGAGGAGAAATTGAATGATG 21612 Query 125119 CTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCA 125178 || || | |||||||| | ||||||| || || || | || || ||||| || | Sbjct 21613 AGGAACGGTACTTTATATCACGAGTTTTGGCATTTTTCGCTGCGTCGGACGGAATTGTGA 21672 Query 125179 ACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTT 125237 |||| || | || || | |||| | || || | || | |||| | || || Sbjct 21673 ACGAGAACATTGTGGAGA-GATTTACACAGGAAGTACAGGTTACGGAGGCGAGATGTTTC 21731 Query 125238 TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGAC 125297 ||||| || ||||| || |||||| | ||||| ||||||||||| ||| || ||| Sbjct 21732 TACGGGTTTCAAATTGCAATCGAGAACATTCACTCCGAAATGTACTCATTACTTATAGAC 21791 Query 125298 ATGTACAT 125305 | ||||| Sbjct 21792 ACTTACAT 21799 >seq46208 Length=8390 Score = 105 bits (116), Expect = 1e-17 Identities = 291/441 (66%), Gaps = 4/441 (1%) Strand=Plus/Minus Query 70032 TTTTGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGAT 70091 |||| ||||| | || || ||| ||||| ||||||| ||||| || ||||| || |||| Sbjct 5971 TTTTAGATTCTATGGGATTTACCAACAGAGAAGAGGGAGATCTCGGTCCAGTATATGGAT 5912 Query 70092 TCCAGTGGAGGCACTCGGGCACCAAGTATG-TAGACTGCGAGACAGACTATTCGGGTCAG 70150 |||| ||| | || | || | | || || ||| | || ||||| || | Sbjct 5911 TCCAATGGCGTCATTATGGAGCGGAATACAATAATATGC-ACACTGACTACCAAGGGAAA 5853 Query 70151 GGTGTTGATCAA-TTGCAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAG 70209 || ||||| || || | | | || | ||| | || || |||| ||| | | Sbjct 5852 GGAGTTGACCAGCTTTCTCATGTT-ATCAAGACTATAAAAGATAACCCAAACGATCGTCG 5794 Query 70210 GATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCA 70269 || |||||||| | ||||||||| |||| | | || ||||| || || || ||||| Sbjct 5793 TATATTAATGTGCGCCTGGAATCCTAAAGATATTCCCCTGATGGCTCTTCCCCCTTGTCA 5734 Query 70270 CTGTTTGGCTCAGTTTTACTCGTACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAG 70329 |||||||||||| ||||| | |||| || | || || | | ||||| | Sbjct 5733 CTGTTTGGCTCAATTTTATGTTGCCAATGGTGAACTATCTTGTCAATTATATCAACGATC 5674 Query 70330 TGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACAT 70389 ||| || ||||| | || ||||| |||||||| ||||| |||||| | || ||| || Sbjct 5673 TGCAGATATGGGATTAGGAGTACCTTTTAACATAGCAAGTTATTCTCTCTTAACGATTAT 5614 Query 70390 GATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCA 70449 | | || || | ||| || ||| | || ||| | || ||| | || || || || Sbjct 5613 GTTGGCCCATGTGACCAATCTCAAACCTGGTGAATTCATTCATACCTTAGGTGATGCACA 5554 Query 70450 CGTGTATTTAAATCACATCGA 70470 ||| || |||||||| || Sbjct 5553 CGTATACAACAATCACATTGA 5533 >seq58440 Length=15377 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 || || || || ||| |||| ||||| | || | || || ||||||||||| ||||| Sbjct 4837 CAAGGTGGTAACAAAAGGCCTGGCGCATTTGCAATTTATTTAGAACCTTGGCATGCGGAT 4896 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 |||||||| ||| | || | || ||||| | || ||||||| | | || ||||| Sbjct 4897 GTTTTTGATTTTCTAGAACTACGTAAAAATACGGGGGCTGAAGAGCAAAGGGCAAGGGAT 4956 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 || || ||||| || ||| | || ||||| |||||||| || || | || | ||| Sbjct 4957 TTATTCTATGCTCTTTGGATTCCTGATTTATTCATGAAACGAGTGGAAGAGGATGGTATT 5016 Query 97056 TGGAGCCTAATGTGCCC 97072 |||||||| ||||| || Sbjct 5017 TGGAGCCTTATGTGTCC 5033 >seq38453 Length=26672 Score = 100 bits (110), Expect = 4e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 127632 ATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGAGTACTTGTT 127691 ||| |||||||| || ||||||||||| ||||||||||| | ||||||||||| ||||| Sbjct 4599 ATCAATAAACTCATTTCCACCATAGTAACGCTTTCCGGGGCGTCCCTCCGAGTATTTGTT 4540 Query 127692 GATGAGACACGAACTCATGCATTCTCGCACCGGTAGAGTGGTAAAGTTTTCCGATGCGAT 127751 | ||||||| || | ||| ||||| || | |||| || || || || || || || Sbjct 4539 GTTGAGACATGAGCCCATACATTCCAAAACGGCGAGAGATGTGAAATTCTCAGAGGCTAT 4480 Query 127752 CAACTCTA 127759 || ||||| Sbjct 4479 CATCTCTA 4472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740288822645400