Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq20317 107 1e-18 seq66674 104 1e-17 seq42503 91.5 9e-14 >seq20317 Length=5186 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| |||| || || || || | || || || ||||| || ||||| || ||| Sbjct 673 CCTCCTCTCAACCTCAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAC 732 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || | || || ||||||||||||||| ||| || ||||||||||| || | ||| Sbjct 733 AATGTACGTCCATCCTCCAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGGG 792 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 || ||||| || || ||| || || ||| ||||||||| | || || Sbjct 793 ATTCCTTCCTTATCCTGGATCTTGGTCTTGACATTTTCAATCGTGTCTGAAGCTTCCACT 852 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || ||||| ||||| |||||||| || || |||||||| Sbjct 853 TCAAGTGTGATGGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCAT 899 >seq66674 Length=28361 Score = 104 bits (114), Expect = 1e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||| || | || || |||||||| || || ||||| || ||| || || Sbjct 27205 CGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGATAAAGTGCGTCCA 27264 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||||||| || ||| ||| || ||||||||||| || | || ||||| || || Sbjct 27265 TCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCCTCCTTG 27324 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| ||| || | | ||| || || ||| | ||| || ||||| || Sbjct 27325 TCTTGAATTTTGGCTTTAACATTCTCAATGGTATCAGAGGGCTCAACTTCAAGAGTGATT 27384 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || || ||||| |||||||| ||||| Sbjct 27385 GTTTTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27419 Score = 98.7 bits (108), Expect = 6e-16 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| | | || || |||||||| || ||||||||||| || || || || || Sbjct 27420 ACCACCTCTAAGTCTTAAAACTAAATGCAACGTGGACTCTTTTTGAATGTTATAGTCTGA 27479 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | || || || ||||| || ||| ||| || ||||||||||| || | || Sbjct 27480 TAAAGTACGTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGG 27539 Query 33262 TATGCCTTCTTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || |||||||| || || | ||| || || ||| || || || | || Sbjct 27540 AATACCTTCTTTGTCTTGAATTTTAGCC---TTAACATTTTCTATAGTATCAGAAGCTTC 27596 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| || ||||| || ||||| || || || ||||| |||||||| ||||| Sbjct 27597 AACTTCAAGAGTGATTGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27647 Score = 82.4 bits (90), Expect = 5e-11 Identities = 161/237 (68%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192 ||||| || || ||||| || | || || ||||| | || || || ||||| || || Sbjct 27639 AATCTGCATTCCACCTCTCAATCTTAAAACTAAATGAAGAGTAGATTCCTTTTGAATGTT 27698 Query 33193 GTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTG 33252 ||||| || | | | || |||||||| || ||| ||| ||||||||||| || Sbjct 27699 ATAATCTGAAAGCGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTG 27758 Query 33253 GTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTT 33312 || | ||| || ||||| || || ||| ||| || ||| ||| || || Sbjct 27759 ATCTGGGGGAATACCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGA 27818 Query 33313 GGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | || || || ||||| || ||||| || ||||| ||||| || || |||||||| Sbjct 27819 AGCTTCGACTTCAAGAGTGATTGTTTTACCAGTAAGGGTTTTGACAAAGATTTGCAT 27875 >seq42503 Length=950 Score = 91.5 bits (100), Expect = 9e-14 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| || | | ||||| || | || ||||| || || ||||||||||| || Sbjct 412 CCTCCTCTCAATCTGAGAACCAAGTGAAGGGTTGACTCCTTCTGGATATTGTAATCGGAA 471 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | | || || |||||||| ||| |||||| || | |||||| || | || Sbjct 472 AGAGTTCTTCCATCTTCTAATTGCTTGCCAGCAAATATCAATCTTTGCTGATCTGGAGGA 531 Query 33263 ATGCCTTCTTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 || ||||| || || || | ||| || || ||| ||| ||||| || || | Sbjct 532 ATTCCTTCCTTATCTTGAATTTTAGCC---TTGACATTTTCAATGGTGTCTGAGGCTTCA 588 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || |||||||| || || ||||| |||||||| ||||| Sbjct 589 ACTTCAAGTGTGATGGTTTTTCCAGTGAGGGTTTTAACGAAAATCTGCAT 638 Score = 84.2 bits (92), Expect = 1e-11 Identities = 161/237 (68%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192 ||||| || || ||||| || | ||| || ||||| | || || || ||||| ||||| Sbjct 630 AATCTGCATTCCTCCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATT 689 Query 33193 GTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTG 33252 ||||| || | | | || |||||||| || ||| ||| ||||||||||| || Sbjct 690 ATAATCTGAAAGNGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTG 749 Query 33253 GTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTT 33312 || | ||| || ||||| || || ||| ||| || ||| ||| ||||| Sbjct 750 ATCTGGGGGAATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGA 809 Query 33313 GGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | || || || ||||| || ||||| || || | || || || || |||||||| Sbjct 810 AGCTTCGACTTCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCAT 866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318454495492170