Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq36711 122 1e-22 >seq36711 Length=13912 Score = 122 bits (134), Expect = 1e-22 Identities = 180/252 (71%), Gaps = 11/252 (4%) Strand=Plus/Minus Query 6479 AGAGCTTCACCAAAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCTTGA 6538 || || ||||||||| || |||||| |||| || ||||| | ||||| || |||||| Sbjct 10171 AGTGCCTCACCAAAAGCTACAGCTTTCCCTGCAATCACATGCATCAGCGGCCCACCTTGA 10112 Query 6539 ATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGAATG 6598 ||||| ||||| || || ||||| || || || || || | | || || || | ||| Sbjct 10111 ATACCTGGGAAAATCGCTGAATTGACCTTTTTAGCAATCGCTTCGTCATTGGTCAAAATC 10052 Query 6599 AGGCCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGTAGTAACAACGTCGGCACCC 6658 | || ||||| || |||||||| |||||||| ||||| || || | || | ||| | Sbjct 10051 ATTCCGCCACGCGGACCGCGCAAGGTTTTATGCGTTGTCGTCGTCGCCACATGCGCATGC 9992 Query 6659 ----CATTTGAGTGGATTAGCGTGAAGACGAGCAGCAACAAAGCCAGCAAAATGGGCCAT 6714 | ||| ||| ||| |||| ||||||||||| ||| || ||||| ||||| Sbjct 9991 GGGAAAGGTGA-CGGA-TAG-----AGACCAGCAGCAACAAGGCCTGCGAAATGTGCCAT 9939 Query 6715 ATCGACCATCAA 6726 |||||| | ||| Sbjct 9938 ATCGACAAGCAA 9927 Score = 87.8 bits (96), Expect = 2e-12 Identities = 203/302 (67%), Gaps = 3/302 (1%) Strand=Plus/Minus Query 6934 GTGC-CCGTGAGTGAGATGGCCGCC-GCAGTCCAAGGACATAGCGAGAACCGAATCACCC 6991 |||| ||||| || | ||| ||||| ||| || || ||||| | || | | || || Sbjct 9729 GTGCGCCGTGGGTCAAATGCCCGCCAGCA-TCTAAAGACATGCCAAGGATTGTGTCCCCT 9671 Query 6992 GGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACG 7051 || ||| ||| || || | || | ||||||||||| ||| || | || || || Sbjct 9670 GGTGTCAAGAGCGCCTGAAACACCCCTTGGTTTGCTTGGCTACCTGAGTTCGGCTGCACA 9611 Query 7052 TTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCA 7111 || ||||||| || ||| |||| |||||| ||||| |||| ||| ||| || Sbjct 9610 TTGGCGAAATCACACGCAAAAAGTTTACAAGCACGTTCAATCGCCAAGTTTTCGGCAACA 9551 Query 7112 TCGGCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTG 7171 || | | ||| || |||||||| || || | ||| || || ||||| || || Sbjct 9550 TCAACATGCTGGCATCCACCATAATAACGACGCCCAGCATAGCCTTCCGCATATTTATTA 9491 Query 7172 GTAAAAATAGAACCCTGTGCTTTCATAACATCGTCTGACACATAGTTTTCGGACGCAATC 7231 || | ||| || || || |||| || || | | ||||||| ||||| || |||||| Sbjct 9490 GTCATAATCGACCCTTGGGCTTGCAGGACCGCTTGTGACACAATATTTTCTGATGCAATC 9431 Query 7232 AA 7233 || Sbjct 9430 AA 9429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554785865243400