Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq66674 104 2e-17 seq20317 91.5 1e-13 seq42503 82.4 6e-11 >seq66674 Length=28361 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| |||| || || || || ||||| || |||||||| ||||| ||||| ||||| Sbjct 27647 TTCCACCTCTCAATCTTAAAACTAAATGAAGAGTAGATTCCTTTTGAATGTTATAATCTG 27706 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| | ||||||||||||||| || ||| | || | | |||||||| || Sbjct 27707 AAAGCGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGG 27766 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||| ||||| |||||| ||| || | ||| || ||| || ||| Sbjct 27767 GAATACCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGCTTCGA 27826 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||| | || || ||||| || || | ||||||||||| ||||||||| Sbjct 27827 CTTCAAGAGTGATTGTTTTACCAGTAAGGGTTTTGACAAAGATTTGCATT 27876 >seq20317 Length=5186 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||||| || || || || ||||| || || ||||| ||||| |||||||| || Sbjct 443 TTCCTCCTCTCAATCTTAATACTAAATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCTG 502 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 || ||| ||||||||| || || || ||| | || || ||||| ||||| || Sbjct 503 ACAAAGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCTGGGG 562 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||| || || ||| || || || | ||| | ||| ||||| Sbjct 563 GAATTCCTTCCTTATCTTGAATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGTTCAA 622 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || | |||||||| || || ||||| ||||||||||| || |||||| Sbjct 623 CCTCGAGCGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAGATCTGCATT 672 >seq42503 Length=950 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||||| || ||||| || ||||| || || ||||| ||||| || || ||||| Sbjct 638 TTCCTCCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTG 697 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| | ||||||||||||||| || ||| | || | | |||||||| || Sbjct 698 AAAGNGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGG 757 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | ||||| || || || || ||| || | ||| | || || ||| Sbjct 758 GAATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGA 817 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||| | || || ||||| ||||| || || || ||||| ||||||||| Sbjct 818 CTTCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCATT 867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419161917559365