Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq27661 172 5e-38 >seq27661 Length=34041 Score = 172 bits (190), Expect = 5e-38 Identities = 317/460 (69%), Gaps = 10/460 (2%) Strand=Plus/Minus Query 12842 TTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTT 12901 || ||||||||| | ||||||||||| | ||| ||||||||||||| || ||||| Sbjct 22449 TTGGACATAACACCCGCCTTTTGATATTCCCCAACCTTTTTTTCAAAAAAATTGGTTTTA 22390 Query 12902 CCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAG-TATTTTTT 12960 || || | |||||||||||||||||||| || ||||| | | ||| || |||| Sbjct 22389 CCATCAAGTGAAATATTTTCCATAAAATCAAAGGGATTCTCAGT----TAGGTAAATTTT 22334 Query 12961 ---ACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAA 13017 ||| | |||| | | ||| || |||||||| | || || || ||| | Sbjct 22333 CGGACAATTAAGCTCTACAAGAAGTCTATCTGCAACAAATTTAATATATTGCACCATGGA 22274 Query 13018 ATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTAT 13077 ||||||||||||||| | | | || || | || || |||| ||| | |||| || Sbjct 22273 ATCACAGTTCATTCCCAACATTCGAACGGGGAGTGCCTCAGTTAGAAATTCACTTTCAAT 22214 Query 13078 ATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCT-CTAATGGAGGATTTGATAGAT 13136 |||| || || || || || || ||| | | |||| || | || | Sbjct 22213 CGCAACAGCCTCACGAATAATTTCGACAAT-ACGAGCCACGGATGGCTTATGAGCAAGGT 22155 Query 13137 GCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGT 13196 | ||||||| | ||| |||||||| |||||||| || |||||| ||| || |||| Sbjct 22154 GTCTAAACATAAGACAGGCAAAATCTGTATGCAATCCCTCGTCTCTAGATATAAGTTCGT 22095 Query 13197 TTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACG 13256 ||||||| || ||||| ||||| || || ||||| || | ||| ||||| | |||||| | Sbjct 22094 TTGAAAAGGTGAGACCGGGCATGAGTCCACGTTTCTTTAACCAGAATATGGAAGCAAATG 22035 Query 13257 AACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTAT 13296 | || ||||| || || || || || || ||||| || || Sbjct 22034 ACCCTGAAAAGAAGATGCCCTCGACGGCAGCAAAGGCAAT 21995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430545567687330