Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq66674 165 2e-35 seq20317 165 2e-35 seq42503 152 1e-31 seq12343 122 2e-22 seq9530 114 3e-20 seq27661 89.7 1e-12 seq8496 86.0 1e-11 >seq66674 Length=28361 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| | || | |||| ||| | |||||||| || ||||| ||||| || Sbjct 27646 ATTCCACCTCTCAATCTTAAAACTAAATGAAGAGTAGATTCCTTTTGAATGTTATAATCT 27705 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || ||||| || ||||| | |||||| |||||||| |||| | |||||||| || Sbjct 27706 GAAAGCGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGG 27765 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || ||||| || ||||| |||||||| | ||||| || ||| Sbjct 27766 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGAAGCTTCG 27825 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || || || ||||||||||| ||||| ||||| || |||||| Sbjct 27826 ACTTCAAGAGTGATTGTTTTACCAGTAAGGGTTTTGACAAAGATTTGCATT 27876 Score = 150 bits (166), Expect = 4e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| | || | ||||| ||| | || ||||| || ||||||||||| || Sbjct 27874 ATTCCACCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCT 27933 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || ||||| || ||||| | |||||| |||||||| |||| | |||||||| || Sbjct 27934 GAAAGGGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGG 27993 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| || ||||| ||||| |||||||| | || || || ||| Sbjct 27994 GGAATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCG 28053 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || || || ||||| || | || || ||||| || |||||| Sbjct 28054 ACTTCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCATT 28104 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| ||||| ||||| || |||| ||| | || ||||| | |||||| ||| Sbjct 27223 GTAGATTCTTTTTGAATGTTATAATCGGATAAAGTGCGTCCATCTTCCAATTGTTTACCA 27282 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | | || ||||| ||||| || || || || || ||||| || ||||| Sbjct 27283 GCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCCTCCTTGTCTTGAATTTTGGCTTTA 27342 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| || || || || || || || || |||||||| |||||| Sbjct 27343 ACATTCTCAATGGTATCAGAGGGCTCAACTTCAAGAGTGATTGTTTTACCAGTGAGTGTT 27402 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 27403 TTAACGAAAATCTGCAT 27419 >seq20317 Length=5186 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| | ||||| || | ||| | || || || || ||||| |||||||| Sbjct 214 ATTCCTCCTCTCAATCTAAGGACCAAATGAAGGGTCGACTCCTTTTGAATGTTATAGTCT 273 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||| | || ||||||| |||||| ||||||||||| | ||||| ||||| ||| Sbjct 274 GATAAAGTACGTCCATCTTCTAATTGTTTRCCAGCAAAAATCAATCTCTGCTGATCTGGA 333 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| ||||| || || || || || |||||||| | || || || ||| Sbjct 334 GGAATTCCTTCCTTATCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCTGAAGCTTCC 393 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || || || || ||||| || ||||| ||||| ||||||||| Sbjct 394 ACTTCAAGAGTGATTGTTTTTCCAGTGAGAGTTTTAACAAAAATCTGCATT 444 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| | || | ||||| ||| | || ||||| || || || || ||||| Sbjct 442 ATTCCTCCTCTCAATCTTAATACTAAATGAAGGGTGGATTCCTTTTGGATGTTGTAGTCT 501 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||| | || ||||| | || ||||||||||| || || ||||| ||||| || Sbjct 502 GACAAAGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCTGGG 561 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| ||||| |||||||| || || || ||||| | |||||| ||||| Sbjct 562 GGAATTCCTTCCTTATCTTGAATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGTTCA 621 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || ||||| ||||| ||||| | ||||| ||||| ||||||||| Sbjct 622 ACCTCGAGCGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAGATCTGCATT 672 Score = 147 bits (162), Expect = 5e-30 Identities = 159/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||||| ||| | || ||||| || ||||||||||| || || |||||||| || ||||| Sbjct 6 TACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAAAGAGTTCTTCCATCTTC 65 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 | |||||| |||||||| |||| | |||||||| || || || ||||| ||||| || Sbjct 66 CAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTATCTTG 125 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||||| ||||| |||||||| | || || || ||| || || || || || || || Sbjct 126 GATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACTTCAAGAGTGATTGTTTT 185 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||| || | || || ||||| || |||||| Sbjct 186 ACCGGTTAAGGTCTTAACAAAGATTTGCATT 216 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| | ||| || |||| || | || ||||| || ||||| || ||||| Sbjct 670 ATTCCTCCTCTCAACCTCAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTCG 729 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | || || || | ||| ||||||||||| || | | || ||||| || Sbjct 730 GACAATGTACGTCCATCCTCCAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGGG 789 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| |||||||| ||||| | || |||||||| | || || || ||| Sbjct 790 GGGATTCCTTCCTTATCCTGGATCTTGGTCTTGACATTTTCAATCGTGTCTGAAGCTTCC 849 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| || || ||||| || || ||||| ||||| || ||||| Sbjct 850 ACTTCAAGTGTGATGGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCAT 899 >seq42503 Length=950 Score = 152 bits (168), Expect = 1e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| | || | ||||| ||| | || ||||| || ||||||||||| || Sbjct 637 ATTCCTCCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCT 696 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || ||||| || ||||| | |||||| |||||||| |||| | |||||||| || Sbjct 697 GAAAGNGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGG 756 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| || ||||| ||||| |||||||| | || || || ||| Sbjct 757 GGAATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCG 816 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || || || || ||||| || | || || ||||| || |||||| Sbjct 817 ACTTCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCATT 867 Score = 136 bits (150), Expect = 9e-27 Identities = 139/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 104378 ATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTC 104437 || |||||||| |||| ||| | || ||||||| |||||| ||||||||||| | ||| Sbjct 1 ATGTTATAGTCTGATAAAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATCAATCTC 60 Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 || ||||| ||||| |||||||| ||||| || || || || || ||||| || | ||| Sbjct 61 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGGATTTTAGCCTTGACATTCTCAATAGTA 120 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 || || ||| || || || || ||||| |||||||| | || || ||||| || ||| Sbjct 121 TCAGAAGCTTCGACTTCAAGAGTGATAGTTTTACCAGTTAAGGTCTTGACAAAAATYTGC 180 Query 104558 AT 104559 || Sbjct 181 AT 182 >seq12343 Length=6788 Score = 122 bits (134), Expect = 2e-22 Identities = 148/201 (74%), Gaps = 13/201 (6%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||| | ||| || ||||| | ||||| | ||| || |||| |||||||||| Sbjct 2186 GTGGATTCTTTTTTAATGTTGTAGTCCAAAAGAGTACGACCATCCTCTAATTGTTTTCCA 2245 Query 104423 GCAAAAATTAGCCTCTGTTGATC---AGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 |||| || | | || ||||| |||||||||||| || ||||||| || |||| | Sbjct 2246 ACAAAGATCAAACGTTGCTGATCTAGAGGAGGTATTCCCTCCTTATCCTTGATTTTTGTT 2305 Query 104480 TTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 || |||||| ||| |||| || ||||| || |||||||| ||||| | ||| Sbjct 2306 TTAACATTT---------TCGATAGGCCTCAACCTCAAGGGTAATAGTTTTACCCGCAAG 2356 Query 104539 TGTTTTTACAAATATCTGCAT 104559 || ||||| || |||||||| Sbjct 2357 GGTCTTTACGAAAATCTGCAT 2377 >seq9530 Length=29750 Score = 114 bits (126), Expect = 3e-20 Identities = 194/281 (69%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 238576 AAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGC 238635 |||| || || |||||||||| | || |||| ||| | || | ||| || | | Sbjct 22208 AAACACATGACGACCTATGGAATGCAGCACAGAACCAACTTGTCACTGAAGGAAAGTTAC 22267 Query 238636 ATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGG 238695 || | | | | ||||||||||||||||||||||| | || ||||| | ||| | | Sbjct 22268 ATGGGTACATGAGAATGTATTGGGCTAAAAAGATATTAGAGTGGACGGAAAGTCCCGATG 22327 Query 238696 AAGCTCTTAGATATAGTATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTA 238755 ||| || | | | ||||| || ||| | || | | | || || | ||| ||| Sbjct 22328 TAGCGCTGGCTGACGCTCTATATCTTAATGATCACTATGCATTGGATGGAAATGATGCTA 22387 Query 238756 ACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGATAGGGCATGGTCTGAGA 238815 | |||| ||||| || |||||||| ||||||||| | || ||| | |||| ||| | Sbjct 22388 ATGGATTTGTAGGGTGCATGTGGTCGATATGTGGAATCCATGATCAAGGATGGCGTGAAA 22447 Query 238816 GACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGA 238856 || | |||||||| ||| || |||| ||||| ||||| ||| Sbjct 22448 GATCCATATTTGGTAAAATTCGATATATGAACTATGATGGA 22488 >seq27661 Length=34041 Score = 89.7 bits (98), Expect = 1e-12 Identities = 214/323 (66%), Gaps = 3/323 (1%) Strand=Plus/Plus Query 268698 ATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCG 268757 ||||||| || || |||| || | || |||||| |||| ||||| || |||||| Sbjct 21478 ATAGATTCGTAATCCTTCCTATCGAATATTTTGATATTTGGAACATGTATAAGAAGGCCG 21537 Query 268758 TTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTG---GA 268814 | || ||||||||||| || ||||| || || | ||||| || || || | Sbjct 21538 TAGCAAGCTTTTGGACTGTGGAGGAAGTGGACCTCAGCAAGGACTTGATCGACTGGGAGG 21597 Query 268815 AAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTA 268874 | || || || || ||| | |||||||| || | || ||||| || | Sbjct 21598 AGAAATTGAATGATGAGGAACGGTACTTTATATCACGAGTTTTGGCATTTTTCGCTGCGT 21657 Query 268875 GTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTG 268934 || || || || ||||| || | || |||| || || || |||||| || | | Sbjct 21658 CGGACGGAATTGTGAACGAGAACATTGTGGAGAGATTTACACAGGAAGTACAGGTTACGG 21717 Query 268935 AAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACA 268994 | || |||||||| ||||| || || || || || || || ||||| || || |||||| Sbjct 21718 AGGCGAGATGTTTCTACGGGTTTCAAATTGCAATCGAGAACATTCACTCCGAAATGTACT 21777 Query 268995 GTCTATTAATAGATACTTATATA 269017 || | ||||| ||||| ||| Sbjct 21778 CATTACTTATAGACACTTACATA 21800 >seq8496 Length=11530 Score = 86.0 bits (94), Expect = 1e-11 Identities = 149/215 (69%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 78575 TTTCTACATGTATATCATCATTTTACTATGTTTA--CTTTGGGATGGATAGGTATTAAAT 78632 ||||| || |||||||||||| |||||||||| || ||| ||||| ||| | |||| Sbjct 2089 TTTCTTCACGTATATCATCATAGTACTATGTTTTGCCTCTGG--TGGATTGGTGTGAAAT 2032 Query 78633 GGTTCGCAGGAGGACAAGCGTTTCTAGGAGCTGAAATAAATTCATTCGTACACGTTATTA 78692 | || ||||| | ||||| || || | |||||||| || || || | | Sbjct 2031 ATGTTGCGGGAGGCTCGTCATTTCTGGGTGCGATGTTTAATTCATTTGTGCATATTTTGA 1972 Query 78693 TGTATACTTATTACGGTATTGCTGCATGCGGCCCTACATTTCGTAAGTATTTGTGGTGGA 78752 ||||| | ||||| | | | || || || || | | |||| || |||||||||| Sbjct 1971 TGTATTCCTATTATTTTTTAACCGCGTGTGGACCCAAAGTTCGGGCTTACTTGTGGTGGA 1912 Query 78753 AGAGATATCTTACTATAATGCAATTGATTCAATTT 78787 ||| |||| | ||| ||| ||| || |||||||| Sbjct 1911 AGAAATATTTGACTTCAATACAAATGGTTCAATTT 1877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150171525635820