Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq46208 131 2e-25 seq21563 127 2e-24 >seq46208 Length=8390 Score = 131 bits (144), Expect = 2e-25 Identities = 403/610 (66%), Gaps = 24/610 (4%) Strand=Plus/Plus Query 6806 TTAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTAT 6865 |||||||||||| || || | || |||| || | || ||||| |||| |||| Sbjct 5513 TTAATTGTTCTTCTAAGGCATCAATGTGATTGTTGTATACGTGTGCATCACCTAAGGTAT 5572 Query 6866 GAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCAT 6925 |||| |||||||| ||||| | || | || || | | | ||||| | | || Sbjct 5573 GAATGAATTCACCAGGTTTGAGATTGGTCACATGGGCCAACATAATCGTTAAGAGAGAAT 5632 Query 6926 AAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGAC 6985 || |||| ||||||||||| ||||||||||||||||| |||| |||||| |||||| Sbjct 5633 AACTTGCTATGTTAAAAGGTACTCCTAATCCCATATCTGCAGATCGTTGATATAATTGAC 5692 Query 6986 AAGATA---AAATATTGTCTATAGCATAAAATTGACACAATACA-TGACATGGAGGTAAA 7041 |||||| | |||| | | ||||||||||| ||| ||| ||||| || || | | Sbjct 5693 AAGATAGTTCACCATTGGC---AACATAAAATTGAGCCAA-ACAGTGACAAGGGGGAAGA 5748 Query 7042 ACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGA 7101 | | | ||||| |||||||| || |||||| ||||| | ||| ||||| Sbjct 5749 GCCATCAGGGGAATATCTTTAGGATTCCAGGCGCACATTAATATACGACGATCGTTTGGG 5808 Query 7102 TT-TGTTTT-TAATTTTGTTATAATTATTTGTAA-TTGATCTATACCCTGACCTTCATAA 7158 || | |||| || | ||| |||| || | || || || | || | |||| || Sbjct 5809 TTATCTTTTATAGTCTTG--ATAA-CATGAGAAAGCTGGTCAACTCCTTTCCCTTGGTAG 5865 Query 7159 TTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGA 7218 | ||| || ||| | || | |||||| |||| | |||||| || ||||| | ||| Sbjct 5866 TCAGTGTGCATATTATTGTATTCCGCTCCATAATGACGCCATTGGAATCCATATACTGGA 5925 Query 7219 CCTAAATCACCTTCTTCACGATGATTAAATCCTAATCGATTTAAATTAGATT---TTGAT 7275 || | ||| || ||||| | | ||||||| | || ||| | ||| |||| Sbjct 5926 CCGAGATCTCCCTCTTCTCTGTTGGTAAATCCCATAGAATCTAA---AAATTCCCTTGAG 5982 Query 7276 CCATAAGCATCCCAAATATGTACAGAtttttttGATAAATTTAA--AGAATTTGTAGATC 7333 | |||||| |||| || ||||||| | || | | | |||||| |||| Sbjct 5983 GAGTTTCCATCCC--ATATCCTCACCTTTTTTTCCTTAAGCTCATTTGCATTTGTTGATC 6040 Query 7334 CTTTAAGGAACCATAAAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGA 7393 || || ||||| || | ||||||| | ||||| | ||| | |||| ||||| | Sbjct 6041 CTCGAATAAACCAAAATAATTCTTCTGCGATTCCTCTTATAAAAACAGTTTTGGTAGTTA 6100 Query 7394 ATAAAGGGAA 7403 ||| || || Sbjct 6101 GTAATGGAAA 6110 >seq21563 Length=25499 Score = 127 bits (140), Expect = 2e-24 Identities = 306/453 (68%), Gaps = 24/453 (5%) Strand=Plus/Plus Query 164535 TGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCATTGCTCAAGCTTTTAAATC 164594 ||||||||||||| || ||||| | |||||||| || | |||| | |||||| Sbjct 16822 TGGACCTCCTGGTACTGGAAAAACTCTTATGGCTCGTCAAATAGGTCAAA-TGTTAAATG 16880 Query 164595 ---GCGACCCGTTAAAATTGTTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTC 164651 | || || ||||| || ||||| ||| || | | | |||||||| |||||||| Sbjct 16881 CAAGAGAACCC--AAAATCGTAAATGGCCCTCAAATTCTAGATAAATATGTGGGTGAGTC 16938 Query 164652 AGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGCAGGTTT 164711 ||||| ||| || | |||||| || |||||||||||| ||||| | ||| Sbjct 16939 TGAAGCAAATATTCGTCGTTTGTTTGCTGATGCTGAAGAAGAAGAAAAGCGATTAGGGCC 16998 Query 164712 -AGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAA------ 164764 | || | || ||| | ||| | || ||||| || |||||| ||||||| Sbjct 16999 CAACTCCGGACTT-CATATCATTATATTCGATGAAATTGATGCTATTTGCAAGGCTAGAG 17057 Query 164765 --AACGTGGT-GATAATATTA---TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAA 164818 | |||| | |||| | ||||| | || || ||||| || || ||||| Sbjct 17058 GGAGTGTGGCCGGAAATACGGGAGTGAATGATACGGTTGTAAATCAATTACTCAGTAAAA 17117 Query 164819 TAGATGGTGTAGAATC--CTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGA 164876 | ||||| || || || ||||| ||| ||| | || | |||||||| || |||| || Sbjct 17118 TTGATGGAGTTGA-TCAGCTTAA-TAACATTCTGATAATTGGTATGACTAATCGACGAGA 17175 Query 164877 TTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATT 164936 | |||||||||||| ||||||| ||||||||||| || || || ||||| || || Sbjct 17176 CATGATTGATGATGCTCTATTACGTCCTGGTCGATTGGAGGTGTCCATTGAAATTGGTTT 17235 Query 164937 ACCCGACAAAGAAGGACGCCTTCAAATTTTAAA 164969 || | ||||| || || | ||||| || || Sbjct 17236 GCCTAATAAAGATGGTCGTGTGCAAATCTTGAA 17268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595252553814000