Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq23495 113 2e-20 seq81675 111 8e-20 seq40251 111 8e-20 seq33895 111 8e-20 seq62800 109 3e-19 seq36148 109 3e-19 seq80384 107 1e-18 seq79890 105 3e-18 seq35891 104 1e-17 seq23641 104 1e-17 seq43691 96.9 2e-15 seq16986 91.5 8e-14 >seq23495 Length=13375 Score = 113 bits (124), Expect = 2e-20 Identities = 82/96 (85%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||| | | |||||||||| |||||||||| |||| ||||||||||||||||| Sbjct 13032 ATAAAAAGTACACTTGGCCCATGGGGGGATCGAACCCGCGACTTTCGCGTTATTAGCACG 13091 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGA 11537 ||||||| |||||||||||||||||||| | || || Sbjct 13092 ACGCTCTAACCAACTGAGCTAATGGGCCTTGGATGA 13127 >seq81675 Length=35386 Score = 111 bits (122), Expect = 8e-20 Identities = 80/92 (87%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 ||||| ||| ||| ||| |||||||| |||||||||| |||| ||||||||||||| Sbjct 18845 ATTAAAAAATAATTCAAT-GGCCCATGGGGGGATCGAACCCGCGACTTTCGCGTTATTAG 18903 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| |||||||||||||||||||| Sbjct 18904 CACGACGCTCTAACCAACTGAGCTAATGGGCC 18935 Score = 107 bits (118), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| |||||||||| |||| |||||||||||||||||||||||| |||| Sbjct 21931 ATTGGCCCATGGGGGGATCGAACCCGCGACTTTCGCGTTATTAGCACGACGCTCTAACCA 21872 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||||||||| Sbjct 21871 ACTGAGCTAATGGGCC 21856 >seq40251 Length=1357 Score = 111 bits (122), Expect = 8e-20 Identities = 75/85 (88%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || |||||||||| |||||||||| |||| |||||||||||||||||||| Sbjct 616 AAAAAACAGTTTGGCCCATGGGGGGATCGAACCCGCGACTTTCGCGTTATTAGCACGACG 675 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 676 CTCTAACCAACTGAGCTAATGGGCC 700 >seq33895 Length=1900 Score = 111 bits (122), Expect = 8e-20 Identities = 77/88 (88%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||| | | |||||||||| |||||||||| |||| ||||||||||||||||| Sbjct 696 ATAAAAAGTACACTTGGCCCATGGGGGGATCGAACCCGCGACTTTCGCGTTATTAGCACG 637 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 636 ACGCTCTAACCAACTGAGCTAATGGGCC 609 >seq62800 Length=57643 Score = 109 bits (120), Expect = 3e-19 Identities = 85/102 (83%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 11429 AAATATAGAATTA-ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||||| | | ||| || ||||| | | ||||||||| |||||||||| |||| ||| Sbjct 3871 AAATAAATATTTATATTAAAAAAAATAYTGGCCCATGGGGGGATCGAACCCGCGACTTTC 3812 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 || |||||||||||||||||| |||||||||||||||||||| Sbjct 3811 GCKTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 3770 >seq36148 Length=3897 Score = 109 bits (120), Expect = 3e-19 Identities = 76/87 (87%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| || ||||||||| |||||||||| |||| |||||||||||||||||| Sbjct 3328 TAAAAAAATAACATGGCCCATGGGGGGATCGAACCCGCGACTTTCGCGTTATTAGCACGA 3269 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 3268 CGCTCTAACCAACTGAGCTAATGGGCC 3242 >seq80384 Length=13741 Score = 107 bits (118), Expect = 1e-18 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 || ||||| | | ||||||||| |||||||||| ||| |||||||||||||||||| Sbjct 12571 TACAAAATAATAATGGCCCATGGGGGGATCGAACCCGMGACTTTCGCGTTATTAGCACGA 12630 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||||||||| Sbjct 12631 CGCTCTAACCAACTGAGCTAATGGGCC 12657 >seq79890 Length=7748 Score = 105 bits (116), Expect = 3e-18 Identities = 84/101 (83%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 |||| || |||| | ||||| | | ||||| |||| |||||||||| |||| |||| Sbjct 4683 AAATCTACAATTTAAAAAAATT--ATTTGGCTCATGGGGGGATCGAACCCGCGACTTTCG 4626 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||| ||| |||||||||||||||||||| Sbjct 4625 CGTTATTAGCACGACGTTCTAACCAACTGAGCTAATGGGCC 4585 >seq35891 Length=2029 Score = 104 bits (114), Expect = 1e-17 Identities = 79/93 (85%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 11438 ATTAATAAAAA-ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||| |||||| || ||| ||||||||| ||||| |||| |||| |||||||||||| Sbjct 1465 ATTACTAAAAACATTAAACTGGCCCATGGGGGGATCCAACCCGCGACTTTCGCGTTATTA 1406 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| | ||| |||||||||||||||||||| Sbjct 1405 GCACGATGATCTAACCAACTGAGCTAATGGGCC 1373 >seq23641 Length=1309 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| |||| |||||||||||||||||||||||| |||||| Sbjct 428 TGGCCCATGGGGGGATCGAACCCGCGACTTTCGCGTTATTAGCACGACGCTCTAACCAAC 369 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 368 TGAGCTAATGGGCC 355 >seq43691 Length=18840 Score = 96.9 bits (106), Expect = 2e-15 Identities = 77/93 (83%), Gaps = 4/93 (4%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAAT----TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||| |||| |||| ||||||||| |||||||||| |||| |||||||||||| Sbjct 8915 AATATAAAAAGAAATATTATGGCCCATGGGGGGATCGAACCCACGACATTCGCGTTATTA 8974 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| || ||||||||||||| ||| Sbjct 8975 GCACGACGCTCTAACTAACTGAGCTAATGAGCC 9007 >seq16986 Length=25089 Score = 91.5 bits (100), Expect = 8e-14 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||| | | |||||||||| ||||||||||| |||| ||||||||||||||||| Sbjct 7766 ATAAAAAGTACACTTGGCCCATGGGGGGATCGAACCTGCGACTTTCGCGTTATTAGCACG 7707 Query 11502 ACGCTCTRACCAACT 11516 ||||||| ||||||| Sbjct 7706 ACGCTCTCACCAACT 7692 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261226159465540