Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_006356.2 Length=36012 Score E Sequences producing significant alignments: (Bits) Value seq36672 114 3e-21 seq22154 114 3e-21 seq22153 114 3e-21 >seq36672 Length=19642 Score = 114 bits (126), Expect = 3e-21 Identities = 118/152 (78%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 35377 GCATACATCCTACACAAAAACCTGAAAAATTATATAGATGGCTTCTTGAA-AATTACGCC 35435 |||| ||||| || |||||||| | ||| ||||| |||| || |||| || ||||| Sbjct 1739 GCATTCATCCAACTCAAAAACCAGTAAAGTTATACGAATGG-TTATTGACGAAATACGCT 1797 Query 35436 AAAGAAGGAGACAAAATACTAGACACACACTTAGGTTCTGGAAGTATAGCAATAGCTTGC 35495 |||||||| || ||||||||||| || || |||||||||| | || ||||| ||||| Sbjct 1798 AAAGAAGGTGATAAAATACTAGATACTCATTTAGGTTCTGCATCAATTGCAATTGCTTGT 1857 Query 35496 CACGATTATAAATTTGATTTAACAGCTTGTGA 35527 || || ||||| |||||||| |||||||| Sbjct 1858 CATAATCTAAAATTCGATTTAACTGCTTGTGA 1889 >seq22154 Length=8790 Score = 114 bits (126), Expect = 3e-21 Identities = 118/152 (78%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 35377 GCATACATCCTACACAAAAACCTGAAAAATTATATAGATGGCTTCTTGAA-AATTACGCC 35435 |||| ||||| || |||||||| | ||| ||||| |||| || |||| || ||||| Sbjct 7465 GCATTCATCCAACTCAAAAACCAGTAAAGTTATACGAATGG-TTATTGACGAAATACGCT 7523 Query 35436 AAAGAAGGAGACAAAATACTAGACACACACTTAGGTTCTGGAAGTATAGCAATAGCTTGC 35495 |||||||| || ||||||||||| || || |||||||||| | || ||||| ||||| Sbjct 7524 AAAGAAGGTGATAAAATACTAGATACTCATTTAGGTTCTGCATCAATTGCAATTGCTTGT 7583 Query 35496 CACGATTATAAATTTGATTTAACAGCTTGTGA 35527 || || ||||| |||||||| |||||||| Sbjct 7584 CATAATCTAAAATTCGATTTAACTGCTTGTGA 7615 >seq22153 Length=8843 Score = 114 bits (126), Expect = 3e-21 Identities = 118/152 (78%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 35377 GCATACATCCTACACAAAAACCTGAAAAATTATATAGATGGCTTCTTGAA-AATTACGCC 35435 |||| ||||| || |||||||| | ||| ||||| |||| || |||| || ||||| Sbjct 7518 GCATTCATCCAACTCAAAAACCAGTAAAGTTATACGAATGG-TTATTGACGAAATACGCT 7576 Query 35436 AAAGAAGGAGACAAAATACTAGACACACACTTAGGTTCTGGAAGTATAGCAATAGCTTGC 35495 |||||||| || ||||||||||| || || |||||||||| | || ||||| ||||| Sbjct 7577 AAAGAAGGTGATAAAATACTAGATACTCATTTAGGTTCTGCATCAATTGCAATTGCTTGT 7636 Query 35496 CACGATTATAAATTTGATTTAACAGCTTGTGA 35527 || || ||||| |||||||| |||||||| Sbjct 7637 CATAATCTAAAATTCGATTTAACTGCTTGTGA 7668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 115003112447020