Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq66674 154 1e-32 seq42503 145 7e-30 seq20317 140 3e-28 seq62093 84.2 2e-11 seq17180 84.2 2e-11 >seq66674 Length=28361 Score = 154 bits (170), Expect = 1e-32 Identities = 180/241 (75%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| | | || ||| |||||||||| || || || || | ||||||||||||||| | | Sbjct 27637 AAAATCTGCATTCCACCTCTCAATCTTAAAACTAAATGAAGAGTAGATTCCTTTTGAATG 27696 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 |||||||| | | || ||| ||| |||| ||||| || |||||||||| | || Sbjct 27697 TTATAATC--TGAAAGCGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTT 27754 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 | |||||||| ||||||||||| ||||| | |||||| || || || | | ||| | Sbjct 27755 GTTGATCTGGGGGAATACCTTCCTTGTCTTGAATTTTAGCTTTAACATTTTCAATAGTAT 27814 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 ||| ||||| |||| ||||| ||||| |||||||| ||||| |||||||| |||| Sbjct 27815 CAGAAGCTTCGACTTCAAGAGTGATTGTTTTACCAGTAAGGGTTTTGACAAAGATTTGCA 27874 Query 95007 T 95007 | Sbjct 27875 T 27875 Score = 143 bits (158), Expect = 2e-29 Identities = 175/237 (74%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||||||| |||| | |||| ||| | || || |||||||| | ||||| Sbjct 28097 TTTGCATTCCTCCTCTTAATCTGAGGACCAGGTGAAGGGTGGACTCCTTTTGGATGTTAT 28156 Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 |||| | | |||||| |||||| | ||||| || ||||||| || | ||| || Sbjct 28157 AATC--TGAAAGTGTTCTTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGTTG 28214 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 ||||| ||||||||||| || || | |||||| |||||||| | | ||||| | Sbjct 28215 GTCTGGGGGAATACCTTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATTGTGTCTGA 28274 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || |||| ||||||||||||||||| |||||||| ||||| |||||||| Sbjct 28275 AGCTTCCACTTCAAGTGTGATGGTTTTTCCAGTCAGAGTTTTAACAAAAATCTGCAT 28331 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| |||||||| | |||||||| ||||| | |||||||||| | |||| | Sbjct 27205 CGCAAAACCAAGTGAAGGGTAGATTCTTTTTGAATGTTATAATCGGATAAAGTGCGTCCA 27264 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||||| || ||||||| || | |||||||||||||||||| || || ||| Sbjct 27265 TCTTCCAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGAATGCCCTCCTTG 27324 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | |||||| || || || | | || |||| | | || || |||| ||||| Sbjct 27325 TCTTGAATTTTGGCTTTAACATTCTCAATGGTATCAGAGGGCTCAACTTCAAGAGTGATT 27384 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| || ||||| || || |||||||| Sbjct 27385 GTTTTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27419 Score = 129 bits (142), Expect = 5e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || || || || ||||| || || || ||||| | |||||| || | Sbjct 27421 CCACCTCTAAGTCTTAAAACTAAATGCAACGTGGACTCTTTTTGAATGTTATAGTC--TG 27478 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 ||| || | |||||| | ||||| || ||||||| || | |||||||||||||| Sbjct 27479 ATAAAGTACGTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAG 27538 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||||||||||||||| | |||||| ||||| || | | ||| |||| || | Sbjct 27539 GAATACCTTCTTTGTCTTGAATTTTAGCCTTAACATTTTCTATAGTATCAGAAGCTTCAA 27598 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| ||||| ||||| ||||| || ||||| || || |||||||| Sbjct 27599 CTTCAAGAGTGATTGTTTTACCAGTGAGTGTTTTAACGAAAATCTGCAT 27647 Score = 120 bits (132), Expect = 3e-22 Identities = 190/269 (71%), Gaps = 5/269 (2%) Strand=Plus/Plus Query 94742 GATTACTTTATCGCTAACGGTTTTTTAAAAT-TTTACACTCCTCCTCTCAATCGCAACAC 94800 |||| |||| | ||| |||||| ||| ||| || ||| |||||||||| ||| || Sbjct 27837 GATTGTTTTACCAGTAAGGGTTTTGACAAAGATTTGCATTCCACCTCTCAATCTCAATAC 27896 Query 94801 CAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCC 94858 || || | ||| ||||||||||| | |||||||| | | || ||| ||| ||| Sbjct 27897 TAAATGAAGAGTGGATTCCTTTTGAATATTATAATC--TGAAAGGGTTCTTCCATCTTCC 27954 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||||| || |||||||||| | ||| |||||||| ||||||||||| || || | Sbjct 27955 AATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTATCTTGG 28014 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || || || || | | ||||| | ||||| |||| ||||| ||||| Sbjct 28015 ATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACTTCAAGAGTGATTGTTTTA 28074 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | || || |||||||| ||||| Sbjct 28075 CCGGTTAAGGTCTTAACAAAGATTTGCAT 28103 >seq42503 Length=950 Score = 145 bits (160), Expect = 7e-30 Identities = 176/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || |||||||||||||| | |||||||| | || || ||||| || | Sbjct 399 AAAAATTTGCATTCCTCCTCTCAATCTGAGAACCAAGTGAAGGGTTGACTCCTTCTGGAT 458 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 || |||||| | ||| | ||| || | || || || |||| || |||||||| Sbjct 459 ATTGTAATCGGAAAGAGTTCTTCCATCTTCTAATTGCTTGCCAGCAAATATCAATCTTTG 518 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||||||||||||||| ||||| || || | |||||| |||||||| | | ||||| Sbjct 519 CTGATCTGGAGGAATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTTTCAATGGTGTC 578 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || |||| ||||||||||||||||| || ||||| || || |||||||| Sbjct 579 TGAGGCTTCAACTTCAAGTGTGATGGTTTTTCCAGTGAGGGTTTTAACGAAAATCTGCAT 638 Score = 123 bits (136), Expect = 2e-23 Identities = 173/242 (71%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || ||||||||||||| | || ||||| | || || |||||||| | Sbjct 171 AAAAATYTGCATYCCTCCTCTCAATCTGAGGACTAAGTGAAGGGTGGACTCCTTTTGGAT 230 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||||||||| | | |||||| |||||| | ||||| || ||||||| || | | Sbjct 231 GTTATAATC--TGAAAGTGTTCTTCCATCCTCTAATTGTTTACCAGCAAAGATCAAACGT 288 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || || ||||| ||||||||||| || || | |||||| ||||| || | | ||| Sbjct 289 TGTTGGTCTGGGGGAATACCTTCCTTATCTTGAATTTTAGCCTTAACATTCTCAATAGTA 348 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| ||||| |||| ||||| ||||| ||||| | || || ||||| || ||| Sbjct 349 TCAGAAGCTTCGACTTCAAGAGTGATAGTTTTACCAGTTAAGGTCTTGACAAAAATTTGC 408 Query 95006 AT 95007 || Sbjct 409 AT 410 Score = 120 bits (132), Expect = 3e-22 Identities = 172/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| | | || |||||||||||||| ||| || || || | ||| ||||||||||| | Sbjct 628 AAAATCTGCATTCCTCCTCTCAATCTCAATACTAAATGAAGAGTGGATTCCTTTTGAATA 687 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 |||||||| | | || ||| ||| |||| ||||| || |||||||||| | || Sbjct 688 TTATAATC--TGAAAGNGTTCTTCCATCTTCCAATTGTTTACCAGCAAAGATTAAACGTT 745 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 | |||||||| ||||||||||| || || | || || || || || | | |||| Sbjct 746 GTTGATCTGGGGGAATACCTTCCTTATCTTGGATCTTGGCTTTAACATTTTCAATTGTGT 805 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | ||||| |||| ||||| ||||| || || | || || |||||||| |||| Sbjct 806 CTGAAGCTTCGACTTCAAGAGTGATTGTTTTACCGGTTAAGGTCTTAACAAAGATTTGCA 865 Query 95007 T 95007 | Sbjct 866 T 866 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 ||||| || |||| || ||||| ||||||||||||||||| ||||| || || | ||| Sbjct 37 TGTTTACCAGCAAAAATCAATCTCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGGATT 96 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 || |||||||| | | ||| |||| ||||| |||| ||||| ||||| ||| Sbjct 97 TTAGCCTTGACATTCTCAATAGTATCAGAAGCTTCGACTTCAAGAGTGATAGTTTTACCA 156 Query 94982 GTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || ||||| || ||||| Sbjct 157 GTTAAGGTCTTGACAAAAATYTGCAT 182 >seq20317 Length=5186 Score = 140 bits (154), Expect = 3e-28 Identities = 175/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || |||||||||||||| || || || || | || ||||||||||| | Sbjct 432 AAAAATCTGCATTCCTCCTCTCAATCTTAATACTAAATGAAGGGTGGATTCCTTTTGGAT 491 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || || || ||| ||| |||| ||| ||||| ||||||| | ||| || Sbjct 492 GTTGTAGTCTGACAAAGTACGTCCATCTTCCAACTGCTTTCCAGCAAAGATCAGTCTCTG 551 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||||||||| ||||| ||||| || || | ||| || ||||| ||| | | || || Sbjct 552 CTGATCTGGGGGAATTCCTTCCTTATCTTGAATCTTGGCCTTAACGTTTTCAATGGTATC 611 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | | || || || | ||| ||||| |||||||| | |||||| |||||||||||||| Sbjct 612 TGAGGGTTCAACCTCGAGCGTAATGGTCTTTCCAGTCAAAGTTTTGACAAAGATCTGCAT 671 Score = 138 bits (152), Expect = 1e-27 Identities = 174/237 (73%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || |||||||||||||| | ||||| || | || || |||||||| | ||||| Sbjct 209 TTTGCATTCCTCCTCTCAATCTAAGGACCAAATGAAGGGTCGACTCCTTTTGAATGTTAT 268 Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 | || | ||| || | ||| || | ||||| || |||| || ||||| ||||| Sbjct 269 AGTC--TGATAAAGTACGTCCATCTTCTAATTGTTTRCCAGCAAAAATCAATCTCTGCTG 326 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 |||||||||||| ||||| || || | ||||| |||||||| | | |||||| | Sbjct 327 ATCTGGAGGAATTCCTTCCTTATCTTGGATTTTAGCCTTGACATTTTCAATAGTGTCTGA 386 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || |||| ||||| ||||||||||| |||||||| ||||| |||||||| Sbjct 387 AGCTTCCACTTCAAGAGTGATTGTTTTTCCAGTGAGAGTTTTAACAAAAATCTGCAT 443 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || |||||||||||| | || || ||||| | ||| ||||||||||| | ||| || || Sbjct 669 CATTCCTCCTCTCAACCTCAGGACTAAGTGGAGAGTGGATTCCTTTTGAATGTTGTAGTC 728 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | || || |||||||| || ||||| ||||||| || | |||||||||||| Sbjct 729 GGACAATGTACGTCCATCCTCCAATTGCTTTCCAGCAAAGATCAAACGTTGCTGATCTGG 788 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 || || ||||| || || | || || | |||||| | | ||||| | || Sbjct 789 GGGGATTCCTTCCTTATCCTGGATCTTGGTCTTGACATTTTCAATCGTGTCTGAAGCTTC 848 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || |||| ||||||||||| || || ||||||||||||||||| ||||| Sbjct 849 CACTTCAAGTGTGATGGTTTTACCCGTGAGAGTTTTCACAAAGATTTGCAT 899 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 94795 CAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATC 94854 ||| || || || | ||| ||||||||||| | |||||||| | ||| | ||| Sbjct 3 CAATACTAAATGAAGAGTGGATTCCTTTTGAATATTATAATCTGAAAGAGTTCTTCCATC 62 Query 94855 CTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTC 94914 |||| ||||| || |||||||||| | ||| |||||||| ||||||||||| || || Sbjct 63 TTCCAATTGTTTACCAGCAAAGATTAAACGTTGTTGATCTGGGGGAATACCTTCCTTATC 122 Query 94915 ATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGT 94974 | || || || || || | | ||||| | ||||| |||| ||||| || Sbjct 123 TTGGATCTTGGCTTTAACATTTTCAATTGTGTCTGAAGCTTCGACTTCAAGAGTGATTGT 182 Query 94975 TTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || | || || |||||||| ||||| Sbjct 183 TTTACCGGTTAAGGTCTTAACAAAGATTTGCAT 215 >seq62093 Length=56387 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/191 (70%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 94818 CCTTT-TGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAG 94876 ||||| || | ||||||||| || ||| | ||| || ||||| || || ||||| Sbjct 3527 CCTTTCTGAATGTTATAATCAGACAAAGTCCTTCCATCTTCGAGCTGCTTGCCAGCAAAG 3586 Query 94877 ATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCG 94936 || | | |||||||||||||||||| ||||| || || | || || | ||| || Sbjct 3587 ATGAGACGTTGCTGATCTGGAGGAATTCCTTCCTTATCCTGGATCTTAGTCTTCACATTT 3646 Query 94937 CCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACA 94996 ||| || || | | ||||| |||| || ||||| || || || | |||||| || Sbjct 3647 TCGATGGTATCTGAAGGTTCGACCTCAAGGGTAATGGTCTTGCCCGTCAAAGTTTTGACG 3706 Query 94997 AAGATCTGCAT 95007 ||||| ||||| Sbjct 3707 AAGATTTGCAT 3717 >seq17180 Length=12851 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| | || ||||| ||||||| || | |||||||||||||||||| || || || Sbjct 4087 ATCCTCTAATTGCTTTCCCGCAAAGATCAAACGTTGCTGATCTGGAGGAATTCCCTCCTT 4028 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | ||||| | ||| || ||| ||| || | | || || |||| || || Sbjct 4027 ATCCTGGATTTTGGTCTTAACATTTTCGATAGTATCTGAGGCCTCAACCTCAAGGGTAAT 3968 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || || || ||||| || |||||||| Sbjct 3967 AGTTTTACCCGTGAGGGTCTTCACGAAAATCTGCAT 3932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447825173279400