Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lepeophtheirus_20salmonis_20[genbank_20GCA_5F001005205.1_202015-05- 08] 83,165 sequences; 665,129,626 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq79736 214 3e-51 seq45485 188 1e-43 seq78297 185 1e-42 seq15685 183 5e-42 seq80619 179 6e-41 seq33770 176 7e-40 seq27816 174 2e-39 seq10612 174 2e-39 seq76608 111 2e-20 seq75351 111 2e-20 seq30188 111 2e-20 seq78730 109 9e-20 >seq79736 Length=35410 Score = 214 bits (236), Expect = 3e-51 Identities = 208/268 (78%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| | |||||| ||||| |||||||| |||||||| || ||||| Sbjct 17390 CGCTAAGCGTCATCGCAAAGTTCTTCGTGATAATATCCAAGGTATCACCAAACCCGCTAT 17449 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| |||| || |||||||| ||||||||| ||||||| ||| | ||||| |||| Sbjct 17450 CCGTCGTTTGGCCCGCCGTGGTGGCGTCAAGCGTATCTCTGGTTTGATTTATGAGGAGAC 17509 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| ||||||| ||| || || ||| || || Sbjct 17510 CCGAGGTGTCCTTAAGGTTTTCCTAGAGAATGTTATCCGTGACGCCGTCACCTACACTGA 17569 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||||||||| |||||||| |||||||||| |||| | ||||| Sbjct 17570 ACACGCCAAGAGGAAGACTGTCACTGCCATGGATGTCGTCTATGCCCTGAAGAGACAAGG 17629 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| |||| || || ||| | ||| Sbjct 17630 ACGTACTCTTTACGGATTCGGAGGCTAA 17657 Score = 214 bits (236), Expect = 3e-51 Identities = 210/271 (77%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||||||||||| | |||||| ||||| |||||||| |||||||| || ||||| Sbjct 29441 CGCTAAGCGTCATCGCAAAGTTCTTCGTGATAATATCCAAGGTATCACCAAACCCGCTAT 29500 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| |||| || |||||||| ||||| ||| ||||||||||| | || || |||| Sbjct 29501 CCGTCGTTTGGCCCGCCGTGGTGGTGTCAAACGTATCTCTGGATTGATTTACGAGGAGAC 29560 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | ||||| ||| ||||||| ||| || || || || || Sbjct 29561 CCGAGGTGTCCTCAAGGTTTTCCTAGAGAATGTTATCCGTGACGCCGTCACTTACACTGA 29620 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||||||||| |||||||| | |||||||| |||| | ||||| Sbjct 29621 ACACGCCAAGAGGAAGACTGTCACTGCCATGGATGTAGTCTATGCTCTGAAGAGACAAGG 29680 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 |||| ||||||| |||||| ||||| || Sbjct 29681 ACGTACTCTTTATGGATTTGGAGGTTAAACT 29711 >seq45485 Length=5319 Score = 188 bits (208), Expect = 1e-43 Identities = 204/269 (76%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | |||||| ||||| ||||||||||| |||||||| || || Sbjct 3227 CGCCAAGCGTCATCGTAAGGTTCTTCGTGATAATATCCAAGGAATTACCAAGCCTGCAAT 3168 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||| ||||||| |||||||| ||||| ||| ||||||| ||| ||||||| || | Sbjct 3167 CCGTCGTTTGGCTCGCCGTGGTGGTGTCAAACGTATCTCTGGTTTGATCTATGAGGAAAC 3108 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCG 16610 |||| ||| | || | ||||| ||| |||||||| ||| ||| || || || || | Sbjct 3107 YCGTGGYGTTCTCAAAGTTTTCCTAGAGAACGTTATCCGTGACGCTGTTACA-TACACTG 3049 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | ||||| || | || ||||| || |||||||| | ||||| || | || | || | Sbjct 3048 AACACGCCAAGAGGAAAACTGTAACTGCCATGGATGTTGTCTACGCTCTCAAGAGGCAGG 2989 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | |||| | |||||||| ||| ||||| Sbjct 2988 GACGTACCCTCTATGGTTTCGGAGGTTAA 2960 >seq78297 Length=42466 Score = 185 bits (204), Expect = 1e-42 Identities = 204/269 (76%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | |||||| ||||| |||||||| || |||||||| || || Sbjct 18794 CGCCAAGCGTCATCGTAAGGTTCTTCGTGATAATATCCAAGGTATAACCAAGCCTGCAAT 18853 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| ||||||| ||||| || ||||| ||| ||||||| ||| ||||||| || | Sbjct 18854 TCGTCGTTTGGCTCGCCGTGGCGGTGTCAAACGTATCTCTGGTTTGATCTATGAGGAAAC 18913 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCG 16610 |||| |||| | || | ||||| ||| |||||||| ||||||| || || || || | Sbjct 18914 CCGTGGTGTTCTCAAAGTTTTCCTAGAGAACGTTATCCGTGATGCTGTTACA-TACACAG 18972 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | ||||| || | |||||||| || |||||||| | ||||| || | || | || | Sbjct 18973 AACACGCCAAGAGAAAGACTGTTACTGCCATGGATGTTGTCTACGCTCTTAAGAGGCAGG 19032 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | |||| | ||||| |||||| ||||| Sbjct 19033 GACGTACCCTCTATGGATTTGGAGGTTAA 19061 >seq15685 Length=8329 Score = 183 bits (202), Expect = 5e-42 Identities = 203/271 (75%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | | |||||| ||||| |||||||| || ||||| ||||| || Sbjct 5316 CGCCAAGCGTCATCGTAAAGTTCTTCGTGATAATATCCAAGGTATTACCAAACCAGCCAT 5375 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| ||||||| |||||||| || |||||| ||||||| || | ||||| |||| Sbjct 5376 TCGTCGTTTGGCTCGCCGTGGTGGTGTTAAGCGTATCTCTGGCTTAATTTATGAGGAGAC 5435 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| | ||||| ||| || |||| ||| ||| | ||| || || Sbjct 5436 CCGTGGTGTCCTCAAGGTTTTCCTAGAGAATGTCATCCGTGACGCTGTTACCTACACTGA 5495 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | |||||||| || |||||||| ||||||| || | || | ||||| Sbjct 5496 ACACGCCAAGAGGAAGACTGTAACTGCCATGGATGTCGTCTACGCTCTTAAGAGACAAGG 5555 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 |||| | || || |||||| ||||| || Sbjct 5556 ACGTACCCTCTACGGATTTGGAGGTTAAGCT 5586 >seq80619 Length=2979 Score = 179 bits (198), Expect = 6e-41 Identities = 200/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | |||||| ||||| ||||||||||| |||||||| || || Sbjct 525 GCCAAGCGTCATCGTAAGGTTCTTCGTGATAATATCCAAGGAATTACCAAGCCTGCCATT 466 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| ||||||| |||||||| ||||||||| | ||||| || ||||||| || | Sbjct 465 CGTCGTTTGGCTCGCCGTGGTGGTGTCAAGCGTATTTCTGGCTTAATCTATGAGGAAACC 406 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | || | ||||| ||| |||||||| ||| ||| | ||| || || Sbjct 405 CGTGGTGTCCTAAAAGTTTTCCTAGAGAACGTTATCCGTGACGCTGTTACCTACACTGAA 346 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | |||||||| || |||||||| | ||||| || | || | || || Sbjct 345 CACGCCAAGAGGAAGACTGTAACTGCCATGGATGTTGTCTACGCTCTCAAGAGGCAGGGA 286 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | |||||||| ||| ||||| Sbjct 285 CGTACCCTCTATGGTTTCGGAGGTTAA 259 >seq33770 Length=8655 Score = 176 bits (194), Expect = 7e-40 Identities = 199/267 (75%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | || || ||||| |||||||| || || ||||| ||||| Sbjct 4984 GCGAAGCGTCATCGTAAAGTACTCCGTGATAATATCCAAGGTATTACTAAGCCTGCTATT 5043 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| ||||||||||||||||||| || ||| | || ||| || | |||||||| | Sbjct 5044 CGTCGTTTGGCTCGTCGTGGTGGAGTGAAACGTATTTCGGGACTGATATATGAAGAAACA 5103 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||| | || | ||||| ||| ||| |||| |||||| | |||||| ||| Sbjct 5104 AGAGGTGTACTTAAAGTATTCCTTGAGAACGTGATCCGAGATGCTGTAACCTATACAGAG 5163 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| || || ||||||| |||| ||||| ||||| || ||||| Sbjct 5164 CACGCCAAGAGGAAGACAGTTACTGCCATGGACGTCGTATATGCTTTGAAGCGACAAGGA 5223 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||||||| | ||| Sbjct 5224 CGTACTCTATACGGTTTTGGAGGATAA 5250 >seq27816 Length=2124 Score = 174 bits (192), Expect = 2e-39 Identities = 195/261 (75%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16439 CGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGT 16498 |||||||| | |||||| ||||| ||||||||||| |||||||| || || |||||| Sbjct 2124 CGTCATCGTAAGGTTCTTCGTGATAATATCCAAGGAATTACCAAGCCTGCCATTCGTCGT 2065 Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 ||||||| |||||||| ||||||||| | ||||| || ||||||| || | |||| | Sbjct 2064 TTGGCTCGCCGTGGTGGTGTCAAGCGTATTTCTGGCTTAATCTATGAGGAAACCCGTGGT 2005 Query 16559 GTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCT 16618 || | || | ||||| ||| |||||||| ||| ||| | ||| || || ||||| Sbjct 2004 GTCCTAAAAGTTTTCCTAGAGAACGTTATCCGTGACGCTGTTACCTACACTGAACACGCC 1945 Query 16619 AAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAG 16678 || | |||||||| || |||||||| | ||||| || | || | || || |||| Sbjct 1944 AAGAGGAAGACTGTAACTGCCATGGATGTTGTCTACGCTCTCAAGAGGCAGGGACGTACC 1885 Query 16679 ATTTATGGTTTTGGAAGTTAA 16699 | |||||||| ||| ||||| Sbjct 1884 CTCTATGGTTTCGGAGGTTAA 1864 >seq10612 Length=6964 Score = 174 bits (192), Expect = 2e-39 Identities = 195/261 (75%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16439 CGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGT 16498 |||||||| | |||||| ||||| ||||||||||| |||||||| || || |||||| Sbjct 6964 CGTCATCGTAAGGTTCTTCGTGATAATATCCAAGGAATTACCAAGCCTGCCATTCGTCGT 6905 Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 ||||||| |||||||| ||||||||| | ||||| || ||||||| || | |||| | Sbjct 6904 TTGGCTCGCCGTGGTGGTGTCAAGCGTATTTCTGGCTTAATCTATGAGGAAACCCGTGGT 6845 Query 16559 GTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCT 16618 || | || | ||||| ||| |||||||| ||| ||| | ||| || || ||||| Sbjct 6844 GTCCTAAAAGTTTTCCTAGAGAACGTTATCCGTGACGCTGTTACCTACACTGAACACGCC 6785 Query 16619 AAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAG 16678 || | |||||||| || |||||||| | ||||| || | || | || || |||| Sbjct 6784 AAGAGGAAGACTGTAACTGCCATGGATGTTGTCTACGCTCTCAAGAGGCAGGGACGTACC 6725 Query 16679 ATTTATGGTTTTGGAAGTTAA 16699 | |||||||| ||| ||||| Sbjct 6724 CTCTATGGTTTCGGAGGTTAA 6704 >seq76608 Length=5736 Score = 111 bits (122), Expect = 2e-20 Identities = 99/119 (83%), Gaps = 4/119 (3%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAG-CCAGCTA 16490 |||||||||||||| || | |||||| ||||| |||||||| ||||||||| |||| || Sbjct 3910 CGCTAAGCGTCATCACAAAAGTCTTCGTGATAATATCCAAGGTATCACCAAGTCCAG-TA 3968 Query 16491 TCCGTCGTCTGG-CTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGA 16548 |||||| | ||| || || ||||||| ||| | ||| ||||||||||| | |||||||| Sbjct 3969 TCCGTCTTTTGGCCTTGT-GTGGTGGTGTCGACCGTATCTCTGGATTGATATATGAAGA 4026 >seq75351 Length=5740 Score = 111 bits (122), Expect = 2e-20 Identities = 99/119 (83%), Gaps = 4/119 (3%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAG-CCAGCTA 16490 |||||||||||||| || | |||||| ||||| |||||||| ||||||||| |||| || Sbjct 3117 CGCTAAGCGTCATCACAAAAGTCTTCGTGATAATATCCAAGGTATCACCAAGTCCAG-TA 3175 Query 16491 TCCGTCGTCTGG-CTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGA 16548 |||||| | ||| || || ||||||| ||| | ||| ||||||||||| | |||||||| Sbjct 3176 TCCGTCTTTTGGCCTTGT-GTGGTGGTGTCGACCGTATCTCTGGATTGATATATGAAGA 3233 >seq30188 Length=5285 Score = 111 bits (122), Expect = 2e-20 Identities = 99/119 (83%), Gaps = 4/119 (3%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAG-CCAGCTA 16490 |||||||||||||| || | |||||| ||||| |||||||| ||||||||| |||| || Sbjct 2169 CGCTAAGCGTCATCACAAAAGTCTTCGTGATAATATCCAAGGTATCACCAAGTCCAG-TA 2111 Query 16491 TCCGTCGTCTGGC-TCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGA 16548 |||||| | |||| | || ||||||| ||| | ||| ||||||||||| | |||||||| Sbjct 2110 TCCGTCTTTTGGCCTTGT-GTGGTGGTGTCGACCGTATCTCTGGATTGATATATGAAGA 2053 >seq78730 Length=1853 Score = 109 bits (120), Expect = 9e-20 Identities = 138/187 (74%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||| ||| ||||||| ||| ||||||| || | |||| |||| | || | ||| Sbjct 1 GGTGTCAAACGTATCTCTGGTTTGATCTATGAGGAAACCCGTGGTGTTCTCAAAGTTTTC 60 Query 16574 CTCAAGACCGTTATCCATGATGCT-TTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 || ||| |||||||| ||| ||| || || || || || ||||| || | |||||||| Sbjct 61 CTAGAGAACGTTATCCGTGACGCTGTTACA-TACACTGAACACGCCAAGAGGAAGACTGT 119 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| | |||||| | |||||||| | || | ||||| |||| | ||||| || || Sbjct 120 CACTGCTATGGATGTTGTCTATGCTCTCAAGAGGCAAGGACGTACCCTCTATGGATTCGG 179 Query 16693 AAGTTAA 16699 | ||||| Sbjct 180 AGGTTAA 186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78999161658345